itk::Statistics::JointDomainImageToListAdaptor< TImage > Class Template Reference

This adaptor returns measurement vectors composed of an image pixel's range domain value (pixel value) and spatial domain value (pixel's physical coordiantes). More...

#include <itkJointDomainImageToListAdaptor.h>

Inheritance diagram for itk::Statistics::JointDomainImageToListAdaptor< TImage >:

[legend]Collaboration diagram for itk::Statistics::JointDomainImageToListAdaptor< TImage >:

[legend]List of all members.

Public Types
typedef ImageJointDomainTraits< TImage >	ImageJointDomainTraitsType
typedef ImageJointDomainTraitsType::MeasurementVectorType	MeasurementVectorType
typedef ImageJointDomainTraitsType::MeasurementType	MeasurementType
typedef ImageJointDomainTraitsType::RangeDomainMeasurementType	RangeDomainMeasurementType
typedef ImageJointDomainTraitsType::PointType	PointType
typedef ImageJointDomainTraitsType::CoordinateRepType	CoordinateRepType
typedef JointDomainImageToListAdaptor	Self
typedef ImageToListAdaptor< TImage, MeasurementVectorType >	Superclass
typedef SmartPointer< Self >	Pointer
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::MeasurementVectorSizeType	MeasurementVectorSizeType
typedef Superclass::FrequencyType	FrequencyType
typedef Superclass::InstanceIdentifier	InstanceIdentifier
typedef TImage::IndexType	ImageIndexType
typedef TImage::IndexType::IndexValueType	ImageIndexValueType
typedef TImage::SizeType	ImageSizeType
typedef TImage::RegionType	ImageRegionType
typedef ImageRegionConstIteratorWithIndex< TImage >	ImageIteratorType
typedef MeasurementVectorType	ValueType
typedef FixedArray< RangeDomainMeasurementType, itkGetStaticConstMacro(RangeDomainDimension) >	RangeDomainMeasurementVectorType
typedef std::vector< InstanceIdentifier >	InstanceIdentifierVectorType
typedef FixedArray< float, itkGetStaticConstMacro(MeasurementVectorSize) >	NormalizationFactorsType
Public Member Functions
virtual const char *	GetNameOfClass () const
	itkStaticConstMacro (MeasurementVectorSize, unsigned int, ImageJointDomainTraitsType::Dimension)
virtual void	SetMeasurementVectorSize (const MeasurementVectorSizeType s)
MeasurementVectorSizeType	GetMeasurementVectorSize () const
	itkStaticConstMacro (RangeDomainDimension, unsigned int, itk::PixelTraits< typename TImage::PixelType >::Dimension)
void	SetNormalizationFactors (NormalizationFactorsType &factors)
const MeasurementVectorType &	GetMeasurementVector (const InstanceIdentifier &id) const
void	ComputeRegion (const MeasurementVectorType &mv, const double radius, ImageRegionType &region) const
void	Search (const MeasurementVectorType &mv, const double radius, InstanceIdentifierVectorType &result) const
Static Public Member Functions
static Pointer	New ()
Protected Member Functions
	JointDomainImageToListAdaptor ()
virtual	~JointDomainImageToListAdaptor ()
void	PrintSelf (std::ostream &os, Indent indent) const

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Detailed Description

template<class TImage>
class itk::Statistics::JointDomainImageToListAdaptor< TImage >

This adaptor returns measurement vectors composed of an image pixel's range domain value (pixel value) and spatial domain value (pixel's physical coordiantes).

This class is a derived class of the ImageToListAdaptor. This class overrides the GetMeasurementVector method. The GetMeasurementVector returns a measurement vector that consist of a pixel's physical coordinates and intensity value. For example, if the image dimension is 3, and the pixel value is two component vector, the measurement vector is a 5 component vector. The first three component will be x, y, z physical coordinates (not index) and the rest two component is the pixel values. The type of component is float or which is determined by the ImageJointDomainTraits class. When the pixel value type is double, the component value type of a measurement vector is double. In other case, the component value type is float becase the physical coordinate value type is float. Since the measurment vector is a composition of spatial domain and range domain, for many statistical analysis, we want to normalize the values from both domains. For this purpose, there is the SetNormalizationFactors method. With the above example (5 component measurement vector), you can specify a 5 component normalization factor array. With such factors, the GetMeasurementVector method returns a measurement vector whose each component is divided by the corresponding component of the factor array.

See also:

Sample, ListSampleBase, ImageToListAdaptor

Definition at line 90 of file itkJointDomainImageToListAdaptor.h.

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Member Typedef Documentation

template<class TImage> typedef SmartPointer<const Self> itk::Statistics::JointDomainImageToListAdaptor< TImage >::ConstPointer

Reimplemented from itk::Statistics::ImageToListAdaptor< TImage, ImageJointDomainTraits< TImage >::MeasurementVectorType >. Definition at line 111 of file itkJointDomainImageToListAdaptor.h.

template<class TImage> typedef ImageJointDomainTraitsType::CoordinateRepType itk::Statistics::JointDomainImageToListAdaptor< TImage >::CoordinateRepType

Definition at line 105 of file itkJointDomainImageToListAdaptor.h.

template<class TImage> typedef Superclass::FrequencyType itk::Statistics::JointDomainImageToListAdaptor< TImage >::FrequencyType

typedefs for Measurement vector, measurement, Instance Identifier, frequency, size, size element value Reimplemented from itk::Statistics::ImageToListAdaptor< TImage, ImageJointDomainTraits< TImage >::MeasurementVectorType >. Definition at line 144 of file itkJointDomainImageToListAdaptor.h.

template<class TImage> typedef TImage::IndexType itk::Statistics::JointDomainImageToListAdaptor< TImage >::ImageIndexType

Definition at line 147 of file itkJointDomainImageToListAdaptor.h.

template<class TImage> typedef TImage::IndexType::IndexValueType itk::Statistics::JointDomainImageToListAdaptor< TImage >::ImageIndexValueType

Definition at line 148 of file itkJointDomainImageToListAdaptor.h.

template<class TImage> typedef ImageRegionConstIteratorWithIndex< TImage > itk::Statistics::JointDomainImageToListAdaptor< TImage >::ImageIteratorType

Definition at line 151 of file itkJointDomainImageToListAdaptor.h.

template<class TImage> typedef ImageJointDomainTraits< TImage > itk::Statistics::JointDomainImageToListAdaptor< TImage >::ImageJointDomainTraitsType

Definition at line 96 of file itkJointDomainImageToListAdaptor.h.

template<class TImage> typedef TImage::RegionType itk::Statistics::JointDomainImageToListAdaptor< TImage >::ImageRegionType

Definition at line 150 of file itkJointDomainImageToListAdaptor.h.

template<class TImage> typedef TImage::SizeType itk::Statistics::JointDomainImageToListAdaptor< TImage >::ImageSizeType

Definition at line 149 of file itkJointDomainImageToListAdaptor.h.

template<class TImage> typedef Superclass::InstanceIdentifier itk::Statistics::JointDomainImageToListAdaptor< TImage >::InstanceIdentifier

InstanceIdentifier typedef. This identifier is a unique sequential id for each measurement vector in a Sample subclass. Reimplemented from itk::Statistics::ImageToListAdaptor< TImage, ImageJointDomainTraits< TImage >::MeasurementVectorType >. Definition at line 145 of file itkJointDomainImageToListAdaptor.h.

template<class TImage> typedef std::vector< InstanceIdentifier > itk::Statistics::JointDomainImageToListAdaptor< TImage >::InstanceIdentifierVectorType

Definition at line 164 of file itkJointDomainImageToListAdaptor.h.

template<class TImage> typedef ImageJointDomainTraitsType::MeasurementType itk::Statistics::JointDomainImageToListAdaptor< TImage >::MeasurementType

Superclass typedefs for Measurement vector, measurement, Instance Identifier, frequency, size, size element value Reimplemented from itk::Statistics::ImageToListAdaptor< TImage, ImageJointDomainTraits< TImage >::MeasurementVectorType >. Definition at line 100 of file itkJointDomainImageToListAdaptor.h.

template<class TImage> typedef Superclass::MeasurementVectorSizeType itk::Statistics::JointDomainImageToListAdaptor< TImage >::MeasurementVectorSizeType

Typedef for the length of each measurement vector Reimplemented from itk::Statistics::ImageToListAdaptor< TImage, ImageJointDomainTraits< TImage >::MeasurementVectorType >. Definition at line 124 of file itkJointDomainImageToListAdaptor.h.

template<class TImage> typedef ImageJointDomainTraitsType::MeasurementVectorType itk::Statistics::JointDomainImageToListAdaptor< TImage >::MeasurementVectorType

Typedefs inherited from the superclass Reimplemented from itk::Statistics::ImageToListAdaptor< TImage, ImageJointDomainTraits< TImage >::MeasurementVectorType >. Definition at line 98 of file itkJointDomainImageToListAdaptor.h.

template<class TImage> typedef FixedArray< float, itkGetStaticConstMacro(MeasurementVectorSize) > itk::Statistics::JointDomainImageToListAdaptor< TImage >::NormalizationFactorsType

Definition at line 167 of file itkJointDomainImageToListAdaptor.h.

template<class TImage> typedef SmartPointer< Self > itk::Statistics::JointDomainImageToListAdaptor< TImage >::Pointer

Reimplemented from itk::Statistics::ImageToListAdaptor< TImage, ImageJointDomainTraits< TImage >::MeasurementVectorType >. Definition at line 110 of file itkJointDomainImageToListAdaptor.h.

template<class TImage> typedef ImageJointDomainTraitsType::PointType itk::Statistics::JointDomainImageToListAdaptor< TImage >::PointType

Definition at line 103 of file itkJointDomainImageToListAdaptor.h.

template<class TImage> typedef ImageJointDomainTraitsType::RangeDomainMeasurementType itk::Statistics::JointDomainImageToListAdaptor< TImage >::RangeDomainMeasurementType

Definition at line 102 of file itkJointDomainImageToListAdaptor.h.

template<class TImage> typedef FixedArray< RangeDomainMeasurementType, itkGetStaticConstMacro( RangeDomainDimension ) > itk::Statistics::JointDomainImageToListAdaptor< TImage >::RangeDomainMeasurementVectorType

Definition at line 162 of file itkJointDomainImageToListAdaptor.h.

template<class TImage> typedef JointDomainImageToListAdaptor itk::Statistics::JointDomainImageToListAdaptor< TImage >::Self

Standard class typedefs Reimplemented from itk::Statistics::ImageToListAdaptor< TImage, ImageJointDomainTraits< TImage >::MeasurementVectorType >. Definition at line 107 of file itkJointDomainImageToListAdaptor.h.

template<class TImage> typedef ImageToListAdaptor< TImage, MeasurementVectorType > itk::Statistics::JointDomainImageToListAdaptor< TImage >::Superclass

Reimplemented from itk::Statistics::ImageToListAdaptor< TImage, ImageJointDomainTraits< TImage >::MeasurementVectorType >. Definition at line 109 of file itkJointDomainImageToListAdaptor.h.

template<class TImage> typedef MeasurementVectorType itk::Statistics::JointDomainImageToListAdaptor< TImage >::ValueType

Reimplemented from itk::Statistics::ImageToListAdaptor< TImage, ImageJointDomainTraits< TImage >::MeasurementVectorType >. Definition at line 153 of file itkJointDomainImageToListAdaptor.h.

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Constructor & Destructor Documentation

template<class TImage> itk::Statistics::JointDomainImageToListAdaptor< TImage >::JointDomainImageToListAdaptor (   )  [protected]

template<class TImage> virtual itk::Statistics::JointDomainImageToListAdaptor< TImage >::~JointDomainImageToListAdaptor (   )  [inline, protected, virtual]

Definition at line 191 of file itkJointDomainImageToListAdaptor.h.

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Member Function Documentation

template<class TImage> void itk::Statistics::JointDomainImageToListAdaptor< TImage >::ComputeRegion (  const MeasurementVectorType &  mv, const double  radius, ImageRegionType &  region )  const [inline]

Computes the image region (rectangular) that enclose the ball defined by the mv (center) and the radius.

template<class TImage> const MeasurementVectorType& itk::Statistics::JointDomainImageToListAdaptor< TImage >::GetMeasurementVector (  const InstanceIdentifier &  id  )  const [inline, virtual]

Gets the measurement vector specified by the instance identifier. This method overrides superclass method. Reimplemented from itk::Statistics::ImageToListAdaptor< TImage, ImageJointDomainTraits< TImage >::MeasurementVectorType >.

template<class TImage> MeasurementVectorSizeType itk::Statistics::JointDomainImageToListAdaptor< TImage >::GetMeasurementVectorSize (   )  const [inline, virtual]

Reimplemented from itk::Statistics::ImageToListAdaptor< TImage, ImageJointDomainTraits< TImage >::MeasurementVectorType >. Definition at line 137 of file itkJointDomainImageToListAdaptor.h.

template<class TImage> virtual const char* itk::Statistics::JointDomainImageToListAdaptor< TImage >::GetNameOfClass (   )  const [virtual]

Run-time type information (and related methods). Reimplemented from itk::Statistics::ImageToListAdaptor< TImage, ImageJointDomainTraits< TImage >::MeasurementVectorType >.

template<class TImage> itk::Statistics::JointDomainImageToListAdaptor< TImage >::itkStaticConstMacro (  RangeDomainDimension  , unsigned  int, itk::PixelTraits< typename TImage::PixelType >::Dimension  )

template<class TImage> itk::Statistics::JointDomainImageToListAdaptor< TImage >::itkStaticConstMacro (  MeasurementVectorSize  , unsigned  int, ImageJointDomainTraitsType::Dimension  )

the number of components in a measurement vector

template<class TImage> static Pointer itk::Statistics::JointDomainImageToListAdaptor< TImage >::New (   )  [static]

Method for creation through the object factory. Reimplemented from itk::Statistics::ImageToListAdaptor< TImage, ImageJointDomainTraits< TImage >::MeasurementVectorType >.

template<class TImage> void itk::Statistics::JointDomainImageToListAdaptor< TImage >::PrintSelf (  std::ostream &  os, Indent  indent )  const [protected, virtual]

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes. Reimplemented from itk::Statistics::ImageToListAdaptor< TImage, ImageJointDomainTraits< TImage >::MeasurementVectorType >.

template<class TImage> void itk::Statistics::JointDomainImageToListAdaptor< TImage >::Search (  const MeasurementVectorType &  mv, const double  radius, InstanceIdentifierVectorType &  result )  const [inline]

Fills he result id vectors with instances that fall within a ball specified by the mv (center) and radius. This method utilizes the ComputRegion

template<class TImage> virtual void itk::Statistics::JointDomainImageToListAdaptor< TImage >::SetMeasurementVectorSize (  const MeasurementVectorSizeType  s  )  [inline, virtual]

Set/Get macros for the length of the measurement vector Reimplemented from itk::Statistics::ImageToListAdaptor< TImage, ImageJointDomainTraits< TImage >::MeasurementVectorType >. Definition at line 126 of file itkJointDomainImageToListAdaptor.h. References itkExceptionMacro.

template<class TImage> void itk::Statistics::JointDomainImageToListAdaptor< TImage >::SetNormalizationFactors (  NormalizationFactorsType &  factors  )

Sets the normalization factors

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The documentation for this class was generated from the following file:

• itkJointDomainImageToListAdaptor.h

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