template<typename TInputImage, typename THessianImage, typename TOutputImage = TInputImage>
class itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >
A filter to enhance structures using Hessian eigensystem-based measures in a multiscale framework.
The filter evaluates a Hessian-based enhancement measure, such as vesselness or objectness, at different scale levels. The Hessian-based measure is computed from the Hessian image at each scale level and the best response is selected.
Minimum and maximum sigma value can be set using SetMinSigma and SetMaxSigma methods respectively. The number of scale levels is set using SetNumberOfSigmaSteps method. Exponentially distributed scale levels are computed within the bound set by the minimum and maximum sigma values
The filter computes a second output image (accessed by the GetScalesOutput method) containing the scales at which each pixel gave the best response.
This code was contributed in the Insight Journal paper: "Generalizing vesselness with respect to dimensionality and shape" by Antiga L. https://doi.org/10.54294/urgadx
- Author
- Luca Antiga Ph.D. Medical Imaging Unit, Bioengineering Department, Mario Negri Institute, Italy.
- See also
- HessianToObjectnessMeasureImageFilter
-
Hessian3DToVesselnessMeasureImageFilter
-
HessianSmoothed3DToVesselnessMeasureImageFilter
-
HessianRecursiveGaussianImageFilter
-
SymmetricEigenAnalysisImageFilter
-
SymmetricSecondRankTensor
Definition at line 87 of file itkMultiScaleHessianBasedMeasureImageFilter.h.
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| virtual::itk::LightObject::Pointer | CreateAnother () const |
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| const HessianImageType * | GetHessianOutput () const |
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| virtual const char * | GetNameOfClass () const |
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| const ScalesImageType * | GetScalesOutput () const |
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| void | SetSigmaStepMethodToEquispaced () |
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| void | SetSigmaStepMethodToLogarithmic () |
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| virtual void | SetSigmaMinimum (double _arg) |
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| virtual double | GetSigmaMinimum () const |
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| virtual void | SetSigmaMaximum (double _arg) |
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| virtual double | GetSigmaMaximum () const |
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| virtual void | SetNumberOfSigmaSteps (unsigned int _arg) |
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| virtual unsigned int | GetNumberOfSigmaSteps () const |
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| virtual void | SetHessianToMeasureFilter (HessianToMeasureFilterType *_arg) |
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| virtual HessianToMeasureFilterType * | GetModifiableHessianToMeasureFilter () |
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| virtual const HessianToMeasureFilterType * | GetHessianToMeasureFilter () const |
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| virtual void | SetNonNegativeHessianBasedMeasure (bool _arg) |
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| virtual bool | GetNonNegativeHessianBasedMeasure () const |
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| virtual void | NonNegativeHessianBasedMeasureOn () |
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| virtual void | NonNegativeHessianBasedMeasureOff () |
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| virtual void | SetSigmaStepMethod (const SigmaStepMethodEnum _arg) |
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| virtual SigmaStepMethodEnum | GetSigmaStepMethod () const |
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| virtual void | SetGenerateScalesOutput (bool _arg) |
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| virtual bool | GetGenerateScalesOutput () const |
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| virtual void | GenerateScalesOutputOn () |
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| virtual void | GenerateScalesOutputOff () |
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| virtual void | SetGenerateHessianOutput (bool _arg) |
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| virtual bool | GetGenerateHessianOutput () const |
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| virtual void | GenerateHessianOutputOn () |
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| virtual void | GenerateHessianOutputOff () |
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| const InputImageType * | GetInput () const |
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| const InputImageType * | GetInput () const |
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| const InputImageType * | GetInput (unsigned int idx) const |
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| const InputImageType * | GetInput (unsigned int idx) const |
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| void | PopBackInput () override |
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| void | PopBackInput () override |
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| void | PopFrontInput () override |
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| void | PopFrontInput () override |
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| virtual void | PushBackInput (const InputImageType *input) |
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| virtual void | PushBackInput (const InputImageType *input) |
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| virtual void | PushFrontInput (const InputImageType *input) |
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| virtual void | PushFrontInput (const InputImageType *input) |
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| virtual void | SetInput (const InputImageType *input) |
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| virtual void | SetInput (const InputImageType *input) |
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| virtual void | SetInput (unsigned int, const TInputImage *image) |
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| virtual void | SetInput (unsigned int, const TInputImage *image) |
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| virtual void | SetCoordinateTolerance (double _arg) |
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| virtual double | GetCoordinateTolerance () const |
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| virtual void | SetCoordinateTolerance (double _arg) |
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| virtual double | GetCoordinateTolerance () const |
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| virtual void | SetDirectionTolerance (double _arg) |
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| virtual double | GetDirectionTolerance () const |
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| virtual void | SetDirectionTolerance (double _arg) |
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| virtual double | GetDirectionTolerance () const |
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| OutputImageType * | GetOutput (unsigned int idx) |
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| virtual void | GraftNthOutput (unsigned int idx, DataObject *graft) |
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| virtual void | GraftOutput (const DataObjectIdentifierType &key, DataObject *graft) |
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| virtual void | GraftOutput (DataObject *graft) |
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| OutputImageType * | GetOutput () |
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| const OutputImageType * | GetOutput () const |
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| ProcessObject::DataObjectPointer | MakeOutput (const ProcessObject::DataObjectIdentifierType &) override |
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| virtual void | AbortGenerateDataOff () |
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| virtual void | AbortGenerateDataOn () |
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| virtual const bool & | GetAbortGenerateData () const |
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| DataObjectPointerArray | GetIndexedInputs () |
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| DataObjectPointerArray | GetIndexedOutputs () |
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| NameArray | GetInputNames () const |
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| DataObjectPointerArray | GetInputs () |
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| MultiThreaderBase * | GetMultiThreader () const |
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| DataObjectPointerArraySizeType | GetNumberOfIndexedInputs () const |
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| DataObjectPointerArraySizeType | GetNumberOfIndexedOutputs () const |
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| DataObjectPointerArraySizeType | GetNumberOfInputs () const |
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| DataObjectPointerArraySizeType | GetNumberOfOutputs () const |
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| virtual DataObjectPointerArraySizeType | GetNumberOfValidRequiredInputs () const |
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| NameArray | GetOutputNames () const |
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| DataObjectPointerArray | GetOutputs () |
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| virtual float | GetProgress () const |
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| NameArray | GetRequiredInputNames () const |
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| bool | HasInput (const DataObjectIdentifierType &key) const |
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| bool | HasOutput (const DataObjectIdentifierType &key) const |
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| void | IncrementProgress (float increment) |
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| virtual void | PrepareOutputs () |
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| virtual void | PropagateRequestedRegion (DataObject *output) |
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| virtual void | ResetPipeline () |
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| virtual void | SetAbortGenerateData (bool _arg) |
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| void | SetMultiThreader (MultiThreaderBase *threader) |
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| virtual void | Update () |
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| virtual void | UpdateLargestPossibleRegion () |
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| virtual void | UpdateOutputData (DataObject *output) |
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| virtual void | UpdateOutputInformation () |
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| void | UpdateProgress (float progress) |
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| virtual void | SetReleaseDataFlag (bool val) |
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| virtual bool | GetReleaseDataFlag () const |
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| void | ReleaseDataFlagOn () |
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| void | ReleaseDataFlagOff () |
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| virtual void | SetReleaseDataBeforeUpdateFlag (bool _arg) |
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| virtual const bool & | GetReleaseDataBeforeUpdateFlag () const |
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| virtual void | ReleaseDataBeforeUpdateFlagOn () |
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| virtual void | ReleaseDataBeforeUpdateFlagOff () |
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| | itkVirtualSetClampMacro (NumberOfWorkUnits, ThreadIdType, 1, ITK_MAX_THREADS) |
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| virtual const ThreadIdType & | GetNumberOfWorkUnits () const |
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| unsigned long | AddObserver (const EventObject &event, Command *cmd) const |
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| unsigned long | AddObserver (const EventObject &event, std::function< void(const EventObject &)> function) const |
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| LightObject::Pointer | CreateAnother () const override |
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| virtual void | DebugOff () const |
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| virtual void | DebugOn () const |
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| Command * | GetCommand (unsigned long tag) |
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| bool | GetDebug () const |
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| MetaDataDictionary & | GetMetaDataDictionary () |
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| const MetaDataDictionary & | GetMetaDataDictionary () const |
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| virtual ModifiedTimeType | GetMTime () const |
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| virtual const TimeStamp & | GetTimeStamp () const |
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| bool | HasObserver (const EventObject &event) const |
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| void | InvokeEvent (const EventObject &) |
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| void | InvokeEvent (const EventObject &) const |
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| virtual void | Modified () const |
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| void | Register () const override |
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| void | RemoveAllObservers () |
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| void | RemoveObserver (unsigned long tag) const |
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| void | SetDebug (bool debugFlag) const |
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| void | SetReferenceCount (int) override |
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| void | UnRegister () const noexcept override |
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| void | SetMetaDataDictionary (const MetaDataDictionary &rhs) |
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| void | SetMetaDataDictionary (MetaDataDictionary &&rrhs) |
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| virtual void | SetObjectName (std::string _arg) |
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| virtual const std::string & | GetObjectName () const |
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| Pointer | Clone () const |
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| virtual void | Delete () |
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| virtual int | GetReferenceCount () const |
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| void | Print (std::ostream &os, Indent indent=0) const |
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| void | EnlargeOutputRequestedRegion (DataObject *) override |
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| void | GenerateData () override |
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| DataObjectPointer | MakeOutput (DataObjectPointerArraySizeType idx) override |
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| | MultiScaleHessianBasedMeasureImageFilter () |
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| void | PrintSelf (std::ostream &os, Indent indent) const override |
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| | ~MultiScaleHessianBasedMeasureImageFilter () override=default |
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| virtual void | CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion) |
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| virtual void | CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion) |
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| virtual void | CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion) |
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| virtual void | CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion) |
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| void | GenerateInputRequestedRegion () override |
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| void | GenerateInputRequestedRegion () override |
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| | ImageToImageFilter () |
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| | ImageToImageFilter () |
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| void | VerifyInputInformation () const override |
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| void | VerifyInputInformation () const override |
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| | ~ImageToImageFilter () override=default |
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| | ~ImageToImageFilter () override=default |
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| virtual void | AfterThreadedGenerateData () |
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| virtual void | AllocateOutputs () |
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| virtual void | BeforeThreadedGenerateData () |
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| void | ClassicMultiThread (ThreadFunctionType callbackFunction) |
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| virtual const ImageRegionSplitterBase * | GetImageRegionSplitter () const |
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| | ImageSource () |
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| virtual unsigned int | SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion) |
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| | ~ImageSource () override=default |
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| virtual void | ThreadedGenerateData (const OutputImageRegionType ®ion, ThreadIdType threadId) |
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| virtual void | DynamicThreadedGenerateData (const OutputImageRegionType &outputRegionForThread) |
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| virtual bool | GetDynamicMultiThreading () const |
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| virtual void | SetDynamicMultiThreading (bool _arg) |
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| virtual void | DynamicMultiThreadingOn () |
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| virtual void | DynamicMultiThreadingOff () |
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| virtual void | AddInput (DataObject *input) |
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| void | AddOptionalInputName (const DataObjectIdentifierType &) |
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| void | AddOptionalInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx) |
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| virtual void | AddOutput (DataObject *output) |
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| bool | AddRequiredInputName (const DataObjectIdentifierType &) |
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| bool | AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx) |
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| virtual void | CacheInputReleaseDataFlags () |
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| virtual void | GenerateOutputInformation () |
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| virtual void | GenerateOutputRequestedRegion (DataObject *output) |
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| DataObject * | GetInput (const DataObjectIdentifierType &key) |
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| const DataObject * | GetInput (const DataObjectIdentifierType &key) const |
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| virtual const DataObjectPointerArraySizeType & | GetNumberOfRequiredInputs () const |
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| virtual const DataObjectPointerArraySizeType & | GetNumberOfRequiredOutputs () const |
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| bool | IsIndexedInputName (const DataObjectIdentifierType &) const |
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| bool | IsIndexedOutputName (const DataObjectIdentifierType &) const |
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| bool | IsRequiredInputName (const DataObjectIdentifierType &) const |
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| DataObjectPointerArraySizeType | MakeIndexFromInputName (const DataObjectIdentifierType &name) const |
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| DataObjectPointerArraySizeType | MakeIndexFromOutputName (const DataObjectIdentifierType &name) const |
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| DataObjectIdentifierType | MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const |
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| DataObjectIdentifierType | MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const |
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| void | PrintSelf (std::ostream &os, Indent indent) const override |
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| | ProcessObject () |
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| virtual void | PropagateResetPipeline () |
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| virtual void | PushBackInput (const DataObject *input) |
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| virtual void | PushFrontInput (const DataObject *input) |
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| virtual void | ReleaseInputs () |
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| virtual void | RemoveInput (const DataObjectIdentifierType &key) |
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| virtual void | RemoveInput (DataObjectPointerArraySizeType) |
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| virtual void | RemoveOutput (const DataObjectIdentifierType &key) |
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| virtual void | RemoveOutput (DataObjectPointerArraySizeType idx) |
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| bool | RemoveRequiredInputName (const DataObjectIdentifierType &) |
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| virtual void | RestoreInputReleaseDataFlags () |
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| virtual void | SetInput (const DataObjectIdentifierType &key, DataObject *input) |
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| virtual void | SetNthInput (DataObjectPointerArraySizeType idx, DataObject *input) |
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| virtual void | SetNthOutput (DataObjectPointerArraySizeType idx, DataObject *output) |
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| void | SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num) |
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| void | SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num) |
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| virtual void | SetNumberOfRequiredInputs (DataObjectPointerArraySizeType) |
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| virtual void | SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg) |
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| virtual void | SetOutput (const DataObjectIdentifierType &name, DataObject *output) |
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| virtual void | SetPrimaryInput (DataObject *object) |
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| virtual void | SetPrimaryOutput (DataObject *object) |
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| void | SetRequiredInputNames (const NameArray &) |
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| virtual void | VerifyPreconditions () const |
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| | ~ProcessObject () override |
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| DataObject * | GetInput (DataObjectPointerArraySizeType idx) |
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| const DataObject * | GetInput (DataObjectPointerArraySizeType idx) const |
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| DataObject * | GetPrimaryInput () |
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| const DataObject * | GetPrimaryInput () const |
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| virtual void | SetPrimaryInputName (const DataObjectIdentifierType &key) |
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| virtual const char * | GetPrimaryInputName () const |
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| DataObject * | GetOutput (const DataObjectIdentifierType &key) |
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| const DataObject * | GetOutput (const DataObjectIdentifierType &key) const |
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| virtual void | SetPrimaryOutputName (const DataObjectIdentifierType &key) |
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| virtual const char * | GetPrimaryOutputName () const |
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| DataObject * | GetOutput (DataObjectPointerArraySizeType i) |
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| const DataObject * | GetOutput (DataObjectPointerArraySizeType i) const |
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| DataObject * | GetPrimaryOutput () |
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| const DataObject * | GetPrimaryOutput () const |
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| virtual bool | GetThreaderUpdateProgress () const |
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| virtual void | ThreaderUpdateProgressOn () |
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| virtual void | ThreaderUpdateProgressOff () |
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| virtual void | SetThreaderUpdateProgress (bool arg) |
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| | Object () |
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| bool | PrintObservers (std::ostream &os, Indent indent) const |
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| virtual void | SetTimeStamp (const TimeStamp &timeStamp) |
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| | ~Object () override |
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| virtual LightObject::Pointer | InternalClone () const |
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| | LightObject () |
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| virtual void | PrintHeader (std::ostream &os, Indent indent) const |
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| virtual void | PrintTrailer (std::ostream &os, Indent indent) const |
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| virtual | ~LightObject () |
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