itk::bio::CellBase Class Reference

non-templated Base class from which the templated Cell classes will be derived. Derived classes are instantiated for a specific space dimension. More...

#include <itkBioCellBase.h>

Inheritance diagram for itk::bio::CellBase:

[legend]Collaboration diagram for itk::bio::CellBase:

[legend]List of all members.

Public Types
typedef itk::RGBPixel< float >	ColorType
typedef unsigned long int	IdentifierType
typedef itk::bio::Genome	GenomeType
typedef GenomeType::GeneIdType	GeneIdType
enum	CellCycleState {   M = 1UL, Gap1, S, Gap2,   Gap0, Apop }
Public Member Functions
virtual ColorType	GetColor (void) const
double	GetRadius (void) const
IdentifierType	GetSelfIdentifier (void) const
IdentifierType	GetParentIdentifier (void) const
virtual bool	MarkedForRemoval (void) const
Static Public Member Functions
static void	SetGrowthRadiusLimit (double)
static void	SetGrowthRadiusIncrement (double)
static void	SetEnergySelfRepairLevel (double)
static void	SetNutrientSelfRepairLevel (double)
static void	SetDefaultColor (const ColorType &color)
static void	SetChemoAttractantHighThreshold (double)
static void	SetChemoAttractantLowThreshold (double)
static void	SetGrowthMaximumLatencyTime (unsigned long latency)
static unsigned long	GetGrowthMaximumLatencyTime (void)
static double	GetGrowthRadiusLimit (void)
static void	SetMaximumGenerationLimit (unsigned long)
static void	SetDivisionMaximumLatencyTime (unsigned long)
static unsigned long	GetDivisionMaximumLatencyTime (void)
static void	ResetCounter (void)
static void	Initialize (void)
Protected Member Functions
	CellBase ()
virtual	~CellBase ()
virtual void	Grow (void)
virtual void	DNAReplication (void)
virtual void	Apoptosis (void)
virtual void	EnergyIntake (void)
virtual void	NutrientsIntake (void)
virtual void	ComputeGeneNetwork (void)
virtual void	SecreteProducts (void)
virtual bool	CheckPointGrowth (void)
virtual bool	CheckPointDNAReplication (void)
virtual bool	CheckPointMitosis (void)
virtual bool	CheckPointApoptosis (void)
void	MarkForRemoval (void)
Protected Attributes
GenomeType *	m_Genome
GenomeType *	m_GenomeCopy
double	m_Pressure
ColorType	m_Color
double	m_Radius
double	m_EnergyReserveLevel
double	m_NutrientsReserveLevel
unsigned long	m_GrowthLatencyTime
IdentifierType	m_ParentIdentifier
IdentifierType	m_SelfIdentifier
unsigned long	m_Generation
CellCycleState	m_CycleState
bool	m_MarkedForRemoval
unsigned long	m_DivisionLatencyTime
bool	m_ScheduleApoptosis
double	m_ChemoAttractantLevel
Static Protected Attributes
static double	DefaultRadius
static ColorType	DefaultColor
static GeneIdType	BlueGene
static GeneIdType	RedGene
static GeneIdType	GreenGene
static GeneIdType	Cdk2E
static GeneIdType	Caspase
static GeneIdType	Pressurin
static double	GrowthRadiusLimit
static double	GrowthRadiusIncrement
static unsigned long	MaximumGenerationLimit
static unsigned long	GrowthMaximumLatencyTime
static unsigned long	DivisionMaximumLatencyTime
static double	EnergySelfRepairLevel
static double	NutrientSelfRepairLevel
static double	DefaultEnergyIntake
static double	DefaultNutrientsIntake
static unsigned long	Counter
static ColorType	WellNourishedColor
static ColorType	HopefullColor
static ColorType	StarvingColor
static double	ChemoAttractantLowThreshold
static double	ChemoAttractantHighThreshold

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Detailed Description

non-templated Base class from which the templated Cell classes will be derived. Derived classes are instantiated for a specific space dimension.

Definition at line 35 of file itkBioCellBase.h.

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Member Typedef Documentation

typedef itk::RGBPixel<float> itk::bio::CellBase::ColorType

Definition at line 38 of file itkBioCellBase.h.

typedef GenomeType::GeneIdType itk::bio::CellBase::GeneIdType

Definition at line 41 of file itkBioCellBase.h.

typedef itk::bio::Genome itk::bio::CellBase::GenomeType

Definition at line 40 of file itkBioCellBase.h.

typedef unsigned long int itk::bio::CellBase::IdentifierType

Definition at line 39 of file itkBioCellBase.h.

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Member Enumeration Documentation

enum itk::bio::CellBase::CellCycleState

Enumeration values: M  Gap1  S  Gap2  Gap0  Apop  Definition at line 51 of file itkBioCellBase.h.

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Constructor & Destructor Documentation

itk::bio::CellBase::CellBase (   )  [protected]

virtual itk::bio::CellBase::~CellBase (   )  [protected, virtual]

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Member Function Documentation

virtual void itk::bio::CellBase::Apoptosis (  void   )  [protected, virtual]

Reimplemented in itk::bio::Cell< NSpaceDimension >.

virtual bool itk::bio::CellBase::CheckPointApoptosis (  void   )  [protected, virtual]

virtual bool itk::bio::CellBase::CheckPointDNAReplication (  void   )  [protected, virtual]

virtual bool itk::bio::CellBase::CheckPointGrowth (  void   )  [protected, virtual]

virtual bool itk::bio::CellBase::CheckPointMitosis (  void   )  [protected, virtual]

virtual void itk::bio::CellBase::ComputeGeneNetwork (  void   )  [protected, virtual]

virtual void itk::bio::CellBase::DNAReplication (  void   )  [protected, virtual]

virtual void itk::bio::CellBase::EnergyIntake (  void   )  [protected, virtual]

virtual ColorType itk::bio::CellBase::GetColor (  void   )  const [virtual]

static unsigned long itk::bio::CellBase::GetDivisionMaximumLatencyTime (  void   )  [static]

static unsigned long itk::bio::CellBase::GetGrowthMaximumLatencyTime (  void   )  [static]

static double itk::bio::CellBase::GetGrowthRadiusLimit (  void   )  [static]

IdentifierType itk::bio::CellBase::GetParentIdentifier (  void   )  const

double itk::bio::CellBase::GetRadius (  void   )  const

IdentifierType itk::bio::CellBase::GetSelfIdentifier (  void   )  const

virtual void itk::bio::CellBase::Grow (  void   )  [protected, virtual]

static void itk::bio::CellBase::Initialize (  void   )  [static]

virtual bool itk::bio::CellBase::MarkedForRemoval (  void   )  const [virtual]

void itk::bio::CellBase::MarkForRemoval (  void   )  [protected]

virtual void itk::bio::CellBase::NutrientsIntake (  void   )  [protected, virtual]

static void itk::bio::CellBase::ResetCounter (  void   )  [static]

virtual void itk::bio::CellBase::SecreteProducts (  void   )  [protected, virtual]

static void itk::bio::CellBase::SetChemoAttractantHighThreshold (  double   )  [static]

static void itk::bio::CellBase::SetChemoAttractantLowThreshold (  double   )  [static]

static void itk::bio::CellBase::SetDefaultColor (  const ColorType &  color  )  [static]

static void itk::bio::CellBase::SetDivisionMaximumLatencyTime (  unsigned  long  )  [static]

static void itk::bio::CellBase::SetEnergySelfRepairLevel (  double   )  [static]

static void itk::bio::CellBase::SetGrowthMaximumLatencyTime (  unsigned long  latency  )  [static]

static void itk::bio::CellBase::SetGrowthRadiusIncrement (  double   )  [static]

static void itk::bio::CellBase::SetGrowthRadiusLimit (  double   )  [static]

static void itk::bio::CellBase::SetMaximumGenerationLimit (  unsigned  long  )  [static]

static void itk::bio::CellBase::SetNutrientSelfRepairLevel (  double   )  [static]

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Member Data Documentation

GeneIdType itk::bio::CellBase::BlueGene [static, protected]

Definition at line 85 of file itkBioCellBase.h.

GeneIdType itk::bio::CellBase::Caspase [static, protected]

Definition at line 89 of file itkBioCellBase.h.

GeneIdType itk::bio::CellBase::Cdk2E [static, protected]

Definition at line 88 of file itkBioCellBase.h.

double itk::bio::CellBase::ChemoAttractantHighThreshold [static, protected]

Definition at line 112 of file itkBioCellBase.h.

double itk::bio::CellBase::ChemoAttractantLowThreshold [static, protected]

Definition at line 111 of file itkBioCellBase.h.

unsigned long itk::bio::CellBase::Counter [static, protected]

Definition at line 105 of file itkBioCellBase.h.

ColorType itk::bio::CellBase::DefaultColor [static, protected]

Definition at line 83 of file itkBioCellBase.h.

double itk::bio::CellBase::DefaultEnergyIntake [static, protected]

Definition at line 102 of file itkBioCellBase.h.

double itk::bio::CellBase::DefaultNutrientsIntake [static, protected]

Definition at line 103 of file itkBioCellBase.h.

double itk::bio::CellBase::DefaultRadius [static, protected]

Definition at line 82 of file itkBioCellBase.h.

unsigned long itk::bio::CellBase::DivisionMaximumLatencyTime [static, protected]

Definition at line 97 of file itkBioCellBase.h.

double itk::bio::CellBase::EnergySelfRepairLevel [static, protected]

Definition at line 99 of file itkBioCellBase.h.

GeneIdType itk::bio::CellBase::GreenGene [static, protected]

Definition at line 87 of file itkBioCellBase.h.

unsigned long itk::bio::CellBase::GrowthMaximumLatencyTime [static, protected]

Definition at line 96 of file itkBioCellBase.h.

double itk::bio::CellBase::GrowthRadiusIncrement [static, protected]

Definition at line 93 of file itkBioCellBase.h.

double itk::bio::CellBase::GrowthRadiusLimit [static, protected]

Definition at line 92 of file itkBioCellBase.h.

ColorType itk::bio::CellBase::HopefullColor [static, protected]

Definition at line 108 of file itkBioCellBase.h.

double itk::bio::CellBase::m_ChemoAttractantLevel [protected]

Definition at line 165 of file itkBioCellBase.h.

ColorType itk::bio::CellBase::m_Color [protected]

Definition at line 146 of file itkBioCellBase.h.

CellCycleState itk::bio::CellBase::m_CycleState [protected]

Definition at line 159 of file itkBioCellBase.h.

unsigned long itk::bio::CellBase::m_DivisionLatencyTime [protected]

Definition at line 162 of file itkBioCellBase.h.

double itk::bio::CellBase::m_EnergyReserveLevel [protected]

Definition at line 149 of file itkBioCellBase.h.

unsigned long itk::bio::CellBase::m_Generation [protected]

Definition at line 157 of file itkBioCellBase.h.

GenomeType* itk::bio::CellBase::m_Genome [protected]

Definition at line 114 of file itkBioCellBase.h.

GenomeType* itk::bio::CellBase::m_GenomeCopy [protected]

Definition at line 115 of file itkBioCellBase.h.

unsigned long itk::bio::CellBase::m_GrowthLatencyTime [protected]

Definition at line 152 of file itkBioCellBase.h.

bool itk::bio::CellBase::m_MarkedForRemoval [protected]

Definition at line 161 of file itkBioCellBase.h.

double itk::bio::CellBase::m_NutrientsReserveLevel [protected]

Definition at line 150 of file itkBioCellBase.h.

IdentifierType itk::bio::CellBase::m_ParentIdentifier [protected]

Definition at line 154 of file itkBioCellBase.h.

double itk::bio::CellBase::m_Pressure [protected]

Definition at line 144 of file itkBioCellBase.h.

double itk::bio::CellBase::m_Radius [protected]

Definition at line 148 of file itkBioCellBase.h.

bool itk::bio::CellBase::m_ScheduleApoptosis [protected]

Definition at line 164 of file itkBioCellBase.h.

IdentifierType itk::bio::CellBase::m_SelfIdentifier [protected]

Definition at line 155 of file itkBioCellBase.h.

unsigned long itk::bio::CellBase::MaximumGenerationLimit [static, protected]

Definition at line 95 of file itkBioCellBase.h.

double itk::bio::CellBase::NutrientSelfRepairLevel [static, protected]

Definition at line 100 of file itkBioCellBase.h.

GeneIdType itk::bio::CellBase::Pressurin [static, protected]

Definition at line 90 of file itkBioCellBase.h.

GeneIdType itk::bio::CellBase::RedGene [static, protected]

Definition at line 86 of file itkBioCellBase.h.

ColorType itk::bio::CellBase::StarvingColor [static, protected]

Definition at line 109 of file itkBioCellBase.h.

ColorType itk::bio::CellBase::WellNourishedColor [static, protected]

Definition at line 107 of file itkBioCellBase.h.

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The documentation for this class was generated from the following file:

• itkBioCellBase.h

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