itk::BloxCoreAtomImage< NDimension > Class Template Reference
[Image Representation Objects]

#include <itkBloxCoreAtomImage.h>

Inheritance diagram for itk::BloxCoreAtomImage< NDimension >:

[legend]Collaboration diagram for itk::BloxCoreAtomImage< NDimension >:

[legend]List of all members.

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Detailed Description

template<unsigned int NDimension>
class itk::BloxCoreAtomImage< NDimension >

N-dimensional image class which handles BloxCoreAtomItems.

A BloxCoreAtomImage stores and processes BloxCoreAtomItem's (in BloxPixel linked lists). The primary task of BloxCoreAtomImage is finding core atoms and storing them in the correct blox location.

Definition at line 44 of file itkBloxCoreAtomImage.h.

Public Types
typedef DefaultPixelAccessorFunctor< Self >	AccessorFunctorType
typedef DefaultPixelAccessor< PixelType >	AccessorType
typedef BloxBoundaryPointItem< NDimension >	BPItemType
typedef SmartPointer< const Self >	ConstPointer
typedef WeakPointer< const Self >	ConstWeakPointer
typedef Superclass::DirectionType	DirectionType
typedef CovariantVector< double, NDimension >	GradientType
typedef Superclass::IndexType	IndexType
typedef IndexType::IndexValueType	IndexValueType
typedef PixelType	InternalPixelType
typedef Superclass::IOPixelType	IOPixelType
typedef NeighborhoodAccessorFunctor< Self >	NeighborhoodAccessorFunctorType
typedef std::vector< PixelType * > *	NodePointerListPointer
typedef std::vector< PixelType * >	NodePointerListType
typedef Superclass::OffsetType	OffsetType
typedef Superclass::OffsetValueType	OffsetValueType
typedef Superclass::PixelContainer	PixelContainer
typedef PixelContainer::ConstPointer	PixelContainerConstPointer
typedef PixelContainer::Pointer	PixelContainerPointer
typedef BloxCoreAtomPixel< NDimension >	PixelType
typedef SmartPointer< Self >	Pointer
typedef Superclass::PointType	PointType
typedef Point< double, NDimension >	PositionType
typedef Superclass::RegionType	RegionType
typedef BloxCoreAtomImage	Self
typedef Superclass::SizeType	SizeType
typedef Superclass::SpacingType	SpacingType
typedef BloxImage< BloxCoreAtomPixel< NDimension >, NDimension >	Superclass
typedef BloxCoreAtomPixel< NDimension >	ValueType
typedef PositionType::VectorType	VectorType
Public Member Functions
void	Allocate ()
void	DoCoreAtomVoting ()
void	DoEigenanalysis ()
void	EmptyImage ()
void	FillBuffer (const BloxCoreAtomPixel< NDimension > &value)
const BloxCoreAtomPixel< NDimension > *	GetBufferPointer () const
Return a pointer to the beginning of the buffer This is used by *the image iterator class *BloxCoreAtomPixel< NDimension > *	GetBufferPointer ()
virtual int	GetMedialNodeCount ()
virtual const char *	GetNameOfClass () const
const NeighborhoodAccessorFunctorType	GetNeighborhoodAccessor () const
NeighborhoodAccessorFunctorType	GetNeighborhoodAccessor ()
virtual NodePointerListPointer	GetNodePointerList ()
BloxCoreAtomPixel< NDimension > &	GetPixel (const IndexType &index)
const BloxCoreAtomPixel< NDimension > &	GetPixel (const IndexType &index) const
const AccessorType	GetPixelAccessor (void) const
AccessorType	GetPixelAccessor (void)
const PixelContainer *	GetPixelContainer () const
PixelContainer *	GetPixelContainer ()
virtual void	Graft (const DataObject *data)
virtual void	Initialize ()
	itkStaticConstMacro (ImageDimension, unsigned int, VImageDimension)
	itkStaticConstMacro (ImageDimension, unsigned int, TImageDimension)
	itkStaticConstMacro (NDimensions, unsigned int, NDimension)
const BloxCoreAtomPixel< NDimension > &	operator[] (const IndexType &index) const
BloxCoreAtomPixel< NDimension > &	operator[] (const IndexType &index)
Get a physical	point (in the space which *the origin and spacing infomation comes from)*from a continuous index(in the index space)*\sa Transform */template< class TCoordRep > void TransformContinuousIndexToPhysicalPoint(const ContinuousIndex< TCoordRep
void	SetPixel (const IndexType &index, const BloxCoreAtomPixel< NDimension > &value)
void	SetPixelContainer (PixelContainer *container)
void	SetRegions (SizeType size)
Convenience methods to set the *BufferedRegion and RequestedRegion Allocate must still be called *void	SetRegions (RegionType region)
bool	TransformPhysicalPointToContinuousIndex (const Point< TCoordRep, VImageDimension > &point, ContinuousIndex< TCoordRep, VImageDimension > &index) const
bool	TransformPhysicalPointToIndex (const Point< TCoordRep, VImageDimension > &point, IndexType &index) const
Static Public Member Functions
static Pointer	New ()
Public Attributes
Get a physical VImageDimension &	index
Convenience methods to set the	LargestPossibleRegion
Protected Member Functions
	BloxCoreAtomImage ()
	BloxImage ()
void	PrintSelf (std::ostream &os, Indent indent) const
virtual	~BloxCoreAtomImage ()

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Member Typedef Documentation

typedef DefaultPixelAccessorFunctor< Self > itk::Image< BloxCoreAtomPixel< NDimension > , VImageDimension >::AccessorFunctorType [inherited]

Definition at line 116 of file itkImage.h.

template<unsigned int NDimension> typedef DefaultPixelAccessor< PixelType > itk::BloxCoreAtomImage< NDimension >::AccessorType

Accessor type that convert data between internal and external representations. Reimplemented from itk::BloxImage< BloxCoreAtomPixel< NDimension >, NDimension >. Definition at line 84 of file itkBloxCoreAtomImage.h.

template<unsigned int NDimension> typedef BloxBoundaryPointItem<NDimension> itk::BloxCoreAtomImage< NDimension >::BPItemType

The type of boundary point item we process * Definition at line 67 of file itkBloxCoreAtomImage.h.

template<unsigned int NDimension> typedef SmartPointer<const Self> itk::BloxCoreAtomImage< NDimension >::ConstPointer

Reimplemented from itk::BloxImage< BloxCoreAtomPixel< NDimension >, NDimension >. Definition at line 60 of file itkBloxCoreAtomImage.h.

template<unsigned int NDimension> typedef WeakPointer<const Self> itk::BloxCoreAtomImage< NDimension >::ConstWeakPointer

Reimplemented from itk::BloxImage< BloxCoreAtomPixel< NDimension >, NDimension >. Definition at line 61 of file itkBloxCoreAtomImage.h.

typedef Superclass::DirectionType itk::Image< BloxCoreAtomPixel< NDimension > , VImageDimension >::DirectionType [inherited]

Direction typedef support. A matrix of direction cosines. Definition at line 141 of file itkImage.h.

template<unsigned int NDimension> typedef CovariantVector<double, NDimension> itk::BloxCoreAtomImage< NDimension >::GradientType

How we represent gradients. Definition at line 93 of file itkBloxCoreAtomImage.h.

template<unsigned int NDimension> typedef Superclass::IndexType itk::BloxCoreAtomImage< NDimension >::IndexType

Index typedef support. An index is used to access pixel values. Reimplemented from itk::BloxImage< BloxCoreAtomPixel< NDimension >, NDimension >. Definition at line 110 of file itkBloxCoreAtomImage.h.

template<unsigned int NDimension> typedef IndexType::IndexValueType itk::BloxCoreAtomImage< NDimension >::IndexValueType

Definition at line 111 of file itkBloxCoreAtomImage.h.

template<unsigned int NDimension> typedef PixelType itk::BloxCoreAtomImage< NDimension >::InternalPixelType

Internal Pixel representation. Used to maintain a uniform API with Image Adaptors and allow to keep a particular internal representation of data while showing a different external representation. Reimplemented from itk::BloxImage< BloxCoreAtomPixel< NDimension >, NDimension >. Definition at line 80 of file itkBloxCoreAtomImage.h.

typedef Superclass::IOPixelType itk::BloxImage< BloxCoreAtomPixel< NDimension > , TImageDimension >::IOPixelType [inherited]

Reimplemented from itk::Image< BloxCoreAtomPixel< NDimension >, TImageDimension >. Definition at line 88 of file itkBloxImage.h.

typedef NeighborhoodAccessorFunctor< Self > itk::Image< BloxCoreAtomPixel< NDimension > , VImageDimension >::NeighborhoodAccessorFunctorType [inherited]

Tyepdef for the functor used to access a neighborhood of pixel pointers. Definition at line 120 of file itkImage.h.

template<unsigned int NDimension> typedef std::vector<PixelType*>* itk::BloxCoreAtomImage< NDimension >::NodePointerListPointer

Definition at line 99 of file itkBloxCoreAtomImage.h.

template<unsigned int NDimension> typedef std::vector<PixelType*> itk::BloxCoreAtomImage< NDimension >::NodePointerListType

Definition at line 96 of file itkBloxCoreAtomImage.h.

template<unsigned int NDimension> typedef Superclass::OffsetType itk::BloxCoreAtomImage< NDimension >::OffsetType

Offset typedef support. An offset is used to access pixel values. Reimplemented from itk::BloxImage< BloxCoreAtomPixel< NDimension >, NDimension >. Definition at line 112 of file itkBloxCoreAtomImage.h.

typedef Superclass::OffsetValueType itk::Image< BloxCoreAtomPixel< NDimension > , VImageDimension >::OffsetValueType [inherited]

Offset typedef (relative position between indices) Definition at line 159 of file itkImage.h.

template<unsigned int NDimension> typedef Superclass::PixelContainer itk::BloxCoreAtomImage< NDimension >::PixelContainer

Convenient typedefs obtained from Superclass. Note: Unlike "normal" images BloxCoreAtomImages support neither Scalar nor Vector calls!!! Scalar and vector traits are not defined and do not make sense for linked lists (at the present time). Reimplemented from itk::BloxImage< BloxCoreAtomPixel< NDimension >, NDimension >. Definition at line 102 of file itkBloxCoreAtomImage.h.

typedef PixelContainer::ConstPointer itk::Image< BloxCoreAtomPixel< NDimension > , VImageDimension >::PixelContainerConstPointer [inherited]

Definition at line 156 of file itkImage.h.

template<unsigned int NDimension> typedef PixelContainer::Pointer itk::BloxCoreAtomImage< NDimension >::PixelContainerPointer

A pointer to the pixel container. Reimplemented from itk::BloxImage< BloxCoreAtomPixel< NDimension >, NDimension >. Definition at line 116 of file itkBloxCoreAtomImage.h.

template<unsigned int NDimension> typedef BloxCoreAtomPixel<NDimension > itk::BloxCoreAtomImage< NDimension >::PixelType

Pixel typedef support. Used to declare pixel type in filters or other operations. Reimplemented from itk::BloxImage< BloxCoreAtomPixel< NDimension >, NDimension >. Definition at line 74 of file itkBloxCoreAtomImage.h.

template<unsigned int NDimension> typedef SmartPointer<Self> itk::BloxCoreAtomImage< NDimension >::Pointer

Reimplemented from itk::BloxImage< BloxCoreAtomPixel< NDimension >, NDimension >. Definition at line 59 of file itkBloxCoreAtomImage.h.

typedef Superclass::PointType itk::Image< BloxCoreAtomPixel< NDimension > , VImageDimension >::PointType [inherited]

Origin typedef support. The origin is the geometric coordinates of the index (0,0). Definition at line 152 of file itkImage.h.

template<unsigned int NDimension> typedef Point<double, NDimension> itk::BloxCoreAtomImage< NDimension >::PositionType

The type of Point used to convert between physical and blox space Definition at line 87 of file itkBloxCoreAtomImage.h.

template<unsigned int NDimension> typedef Superclass::RegionType itk::BloxCoreAtomImage< NDimension >::RegionType

Region typedef support. A region is used to specify a subset of an image. Reimplemented from itk::BloxImage< BloxCoreAtomPixel< NDimension >, NDimension >. Definition at line 113 of file itkBloxCoreAtomImage.h.

template<unsigned int NDimension> typedef BloxCoreAtomImage itk::BloxCoreAtomImage< NDimension >::Self

Standard class typedefs. Reimplemented from itk::BloxImage< BloxCoreAtomPixel< NDimension >, NDimension >. Definition at line 49 of file itkBloxCoreAtomImage.h.

template<unsigned int NDimension> typedef Superclass::SizeType itk::BloxCoreAtomImage< NDimension >::SizeType

Size typedef support. A size is used to define region bounds. Reimplemented from itk::BloxImage< BloxCoreAtomPixel< NDimension >, NDimension >. Definition at line 109 of file itkBloxCoreAtomImage.h.

typedef Superclass::SpacingType itk::Image< BloxCoreAtomPixel< NDimension > , VImageDimension >::SpacingType [inherited]

Spacing typedef support. Spacing holds the size of a pixel. The spacing is the geometric distance between image samples. Definition at line 148 of file itkImage.h.

template<unsigned int NDimension> typedef BloxImage<BloxCoreAtomPixel<NDimension>, NDimension> itk::BloxCoreAtomImage< NDimension >::Superclass

Reimplemented from itk::BloxImage< BloxCoreAtomPixel< NDimension >, NDimension >. Definition at line 57 of file itkBloxCoreAtomImage.h.

typedef BloxCoreAtomPixel< NDimension > itk::Image< BloxCoreAtomPixel< NDimension > , VImageDimension >::ValueType [inherited]

Typedef alias for PixelType Definition at line 103 of file itkImage.h.

template<unsigned int NDimension> typedef PositionType::VectorType itk::BloxCoreAtomImage< NDimension >::VectorType

The vector between two points Definition at line 90 of file itkBloxCoreAtomImage.h.

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Constructor & Destructor Documentation

template<unsigned int NDimension> itk::BloxCoreAtomImage< NDimension >::BloxCoreAtomImage (   )  [protected]

template<unsigned int NDimension> virtual itk::BloxCoreAtomImage< NDimension >::~BloxCoreAtomImage (   )  [protected, virtual]

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Member Function Documentation

void itk::Image< BloxCoreAtomPixel< NDimension > , VImageDimension >::Allocate (   )  [inherited]

Allocate the image memory. The size of the image must already be set, e.g. by calling SetRegions().

itk::BloxImage< BloxCoreAtomPixel< NDimension > , TImageDimension >::BloxImage (   )  [protected, inherited]

template<unsigned int NDimension> void itk::BloxCoreAtomImage< NDimension >::DoCoreAtomVoting (   )

Core atom voting routine.

template<unsigned int NDimension> void itk::BloxCoreAtomImage< NDimension >::DoEigenanalysis (   )

Do eigenanalysis on all pixels in the image.

void itk::BloxImage< BloxCoreAtomPixel< NDimension > , TImageDimension >::EmptyImage (   )  [inherited]

Traverse the entire image and empty all linked lists. This is used in filters prior to generating new data, to avoid appending the new data onto the old

void itk::Image< BloxCoreAtomPixel< NDimension > , VImageDimension >::FillBuffer (  const BloxCoreAtomPixel< NDimension > &  value  )  [inherited]

Fill the image buffer with a value. Be sure to call Allocate() first.

const BloxCoreAtomPixel< NDimension > * itk::Image< BloxCoreAtomPixel< NDimension > , VImageDimension >::GetBufferPointer (   )  const [inline, inherited]

Definition at line 241 of file itkImage.h.

Return a pointer to the beginning of the buffer This is used by* the image iterator class* BloxCoreAtomPixel< NDimension > * itk::Image< BloxCoreAtomPixel< NDimension > , VImageDimension >::GetBufferPointer (   )  [inline, inherited]

Definition at line 239 of file itkImage.h.

template<unsigned int NDimension> virtual int itk::BloxCoreAtomImage< NDimension >::GetMedialNodeCount (   )  [virtual]

get macro for m_MedialNodeCount.

template<unsigned int NDimension> virtual const char* itk::BloxCoreAtomImage< NDimension >::GetNameOfClass (   )  const [virtual]

Run-time type information (and related methods). Reimplemented from itk::BloxImage< BloxCoreAtomPixel< NDimension >, NDimension >.

const NeighborhoodAccessorFunctorType itk::Image< BloxCoreAtomPixel< NDimension > , VImageDimension >::GetNeighborhoodAccessor (   )  const [inline, inherited]

Return the NeighborhoodAccessor functor Definition at line 282 of file itkImage.h.

NeighborhoodAccessorFunctorType itk::Image< BloxCoreAtomPixel< NDimension > , VImageDimension >::GetNeighborhoodAccessor (   )  [inline, inherited]

Return the NeighborhoodAccessor functor Definition at line 278 of file itkImage.h.

template<unsigned int NDimension> virtual NodePointerListPointer itk::BloxCoreAtomImage< NDimension >::GetNodePointerList (   )  [virtual]

get macro for m_NodePointerList.

BloxCoreAtomPixel< NDimension > & itk::Image< BloxCoreAtomPixel< NDimension > , VImageDimension >::GetPixel (  const IndexType &  index  )  [inline, inherited]

Get a reference to a pixel (e.g. for editing). For efficiency, this function does not check that the image has actually been allocated yet. Definition at line 217 of file itkImage.h.

const BloxCoreAtomPixel< NDimension > & itk::Image< BloxCoreAtomPixel< NDimension > , VImageDimension >::GetPixel (  const IndexType &  index  )  const [inline, inherited]

Get a pixel (read only version). For efficiency, this function does not check that the image has actually been allocated yet. Definition at line 207 of file itkImage.h.

const AccessorType itk::Image< BloxCoreAtomPixel< NDimension > , VImageDimension >::GetPixelAccessor (  void   )  const [inline, inherited]

Return the Pixel Accesor object Definition at line 274 of file itkImage.h.

AccessorType itk::Image< BloxCoreAtomPixel< NDimension > , VImageDimension >::GetPixelAccessor (  void   )  [inline, inherited]

Return the Pixel Accessor object Definition at line 270 of file itkImage.h.

const PixelContainer* itk::Image< BloxCoreAtomPixel< NDimension > , VImageDimension >::GetPixelContainer (   )  const [inline, inherited]

Definition at line 249 of file itkImage.h.

PixelContainer* itk::Image< BloxCoreAtomPixel< NDimension > , VImageDimension >::GetPixelContainer (   )  [inline, inherited]

Return a pointer to the container. Definition at line 246 of file itkImage.h.

virtual void itk::Image< BloxCoreAtomPixel< NDimension > , VImageDimension >::Graft (  const DataObject *  data  )  [virtual, inherited]

Graft the data and information from one image to another. This is a convenience method to setup a second image with all the meta information of another image and use the same pixel container. Note that this method is different than just using two SmartPointers to the same image since separate DataObjects are still maintained. This method is similar to ImageSource::GraftOutput(). The implementation in ImageBase simply calls CopyInformation() and copies the region ivars. The implementation here refers to the superclass' implementation and then copies over the pixel container.

virtual void itk::Image< BloxCoreAtomPixel< NDimension > , VImageDimension >::Initialize (  void   )  [virtual, inherited]

Restore the data object to its initial state. This means releasing memory.

itk::Image< BloxCoreAtomPixel< NDimension > , VImageDimension >::itkStaticConstMacro (  ImageDimension  , unsigned  int, VImageDimension  )  [inherited]

Dimension of the image. This constant is used by functions that are templated over image type (as opposed to being templated over pixel type and dimension) when they need compile time access to the dimension of the image.

itk::BloxImage< BloxCoreAtomPixel< NDimension > , TImageDimension >::itkStaticConstMacro (  ImageDimension  , unsigned  int, TImageDimension  )  [inherited]

Dimension of the image. This enum is used by functions that are templated over image type (as opposed to being templated over pixel type and dimension) when they need compile time access to the dimension of the image.

template<unsigned int NDimension> itk::BloxCoreAtomImage< NDimension >::itkStaticConstMacro (  NDimensions  , unsigned  int, NDimension  )

Dimension of the image. This constant is used by functions that are templated over image type (as opposed to being templated over pixel type and dimension) when they need compile time access to the dimension of the image.

template<unsigned int NDimension> static Pointer itk::BloxCoreAtomImage< NDimension >::New (   )  [static]

Method for creation through the object factory. Reimplemented from itk::BloxImage< BloxCoreAtomPixel< NDimension >, NDimension >.

const BloxCoreAtomPixel< NDimension > & itk::Image< BloxCoreAtomPixel< NDimension > , VImageDimension >::operator[] (  const IndexType &  index  )  const [inline, inherited]

Access a pixel. This version can only be an rvalue. For efficiency, this function does not check that the image has actually been allocated yet. Definition at line 234 of file itkImage.h.

BloxCoreAtomPixel< NDimension > & itk::Image< BloxCoreAtomPixel< NDimension > , VImageDimension >::operator[] (  const IndexType &  index  )  [inline, inherited]

Access a pixel. This version can be an lvalue. For efficiency, this function does not check that the image has actually been allocated yet. Definition at line 227 of file itkImage.h.

Get a physical itk::Image< BloxCoreAtomPixel< NDimension > , VImageDimension >::point (  in the space which *the origin and spacing infomation comes  from  )  const [inherited]

template<unsigned int NDimension> void itk::BloxCoreAtomImage< NDimension >::PrintSelf (  std::ostream &  os, Indent  indent )  const [protected]

Reimplemented from itk::BloxImage< BloxCoreAtomPixel< NDimension >, NDimension >.

void itk::Image< BloxCoreAtomPixel< NDimension > , VImageDimension >::SetPixel (  const IndexType &  index, const BloxCoreAtomPixel< NDimension > &  value )  [inline, inherited]

Set a pixel value. Allocate() needs to have been called first -- for efficiency, this function does not check that the image has actually been allocated yet. Definition at line 197 of file itkImage.h.

void itk::Image< BloxCoreAtomPixel< NDimension > , VImageDimension >::SetPixelContainer (  PixelContainer *  container  )  [inherited]

Set the container to use. Note that this does not cause the DataObject to be modified.

void itk::Image< BloxCoreAtomPixel< NDimension > , VImageDimension >::SetRegions (  SizeType  size  )  [inline, inherited]

Definition at line 176 of file itkImage.h.

Convenience methods to set the * BufferedRegion and RequestedRegion Allocate must still be called* void itk::Image< BloxCoreAtomPixel< NDimension > , VImageDimension >::SetRegions (  RegionType  region  )  [inline, inherited]

Definition at line 168 of file itkImage.h.

bool itk::Image< BloxCoreAtomPixel< NDimension > , VImageDimension >::TransformPhysicalPointToContinuousIndex (  const Point< TCoordRep, VImageDimension > &  point, ContinuousIndex< TCoordRep, VImageDimension > &  index )  const [inline, inherited]

Get the continuous index from a physical point. Returns true if the resulting index is within the image, false otherwise. See also: Transform Definition at line 291 of file itkImage.h.

bool itk::Image< BloxCoreAtomPixel< NDimension > , VImageDimension >::TransformPhysicalPointToIndex (  const Point< TCoordRep, VImageDimension > &  point, IndexType &  index )  const [inline, inherited]

Get the index (discrete) from a physical point. Floating point index results are truncated to integers. Returns true if the resulting index is within the image, false otherwise See also: Transform Definition at line 313 of file itkImage.h.

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Member Data Documentation

Get a physical VImageDimension& itk::Image< BloxCoreAtomPixel< NDimension > , VImageDimension >::index [inherited]

Definition at line 338 of file itkImage.h.

Convenience methods to set the itk::Image< BloxCoreAtomPixel< NDimension > , VImageDimension >::LargestPossibleRegion [inherited]

Definition at line 165 of file itkImage.h.

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The documentation for this class was generated from the following file:

• itkBloxCoreAtomImage.h

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