#include <itkElasticBodySplineKernelTransform.h>
Inheritance diagram for itk::ElasticBodySplineKernelTransform< TScalarType, NDimensions >:


Definition at line 40 of file itkElasticBodySplineKernelTransform.h.
Public Types | |
| typedef vnl_matrix_fixed< TScalarType, NDimensions, NDimensions > | AMatrixType |
| typedef vnl_vector_fixed< TScalarType, NDimensions > | BMatrixType |
| typedef vnl_matrix_fixed< TScalarType, NDimensions, 1 > | ColumnMatrixType |
| typedef SmartPointer< const Self > | ConstPointer |
| typedef vnl_matrix< TScalarType > | DMatrixType |
| typedef vnl_matrix_fixed< TScalarType, NDimensions, NDimensions > | IMatrixType |
| typedef Superclass::InputCovariantVectorType | InputCovariantVectorType |
| typedef Superclass::InputPointType | InputPointType |
| typedef Superclass::InputVectorType | InputVectorType |
| typedef vnl_vector_fixed< TScalarType, NInputDimensions > | InputVnlVectorType |
| typedef Superclass::JacobianType | JacobianType |
| typedef vnl_matrix< TScalarType > | KMatrixType |
| typedef vnl_matrix< TScalarType > | LMatrixType |
| typedef Superclass::OutputCovariantVectorType | OutputCovariantVectorType |
| typedef Superclass::OutputPointType | OutputPointType |
| typedef Superclass::OutputVectorType | OutputVectorType |
| typedef vnl_vector_fixed< TScalarType, NOutputDimensions > | OutputVnlVectorType |
| typedef Superclass::ParametersType | ParametersType |
| typedef vnl_matrix< TScalarType > | PMatrixType |
| typedef SmartPointer< Self > | Pointer |
| typedef PointSetType::PointsContainerConstIterator | PointsConstIterator |
| typedef PointSetType::PointsContainer | PointsContainer |
| typedef PointSetType::Pointer | PointSetPointer |
| typedef DefaultStaticMeshTraits< TScalarType, NDimensions, NDimensions, TScalarType, TScalarType > | PointSetTraitsType |
| typedef PointSet< InputPointType, NDimensions, PointSetTraitsType > | PointSetType |
| typedef PointSetType::PointsContainerIterator | PointsIterator |
| typedef vnl_matrix_fixed< TScalarType, 1, NDimensions > | RowMatrixType |
| typedef Superclass::ScalarType | ScalarType |
| typedef ElasticBodySplineKernelTransform | Self |
| typedef KernelTransform< TScalarType, NDimensions > | Superclass |
| typedef VectorSetType::Pointer | VectorSetPointer |
| typedef itk::VectorContainer< unsigned long, InputVectorType > | VectorSetType |
| typedef vnl_matrix< TScalarType > | WMatrixType |
| typedef vnl_matrix< TScalarType > | YMatrixType |
Public Member Functions | |
| void | ComputeWMatrix (void) |
| virtual LightObject::Pointer | CreateAnother () const |
| virtual void | DebugOff () const |
| virtual void | DebugOn () const |
| virtual void | Delete () |
| virtual TScalarType | GetAlpha () |
| Command * | GetCommand (unsigned long tag) |
| bool | GetDebug () const |
| virtual VectorSetType * | GetDisplacements () |
| virtual const ParametersType & | GetFixedParameters (void) const |
| unsigned int | GetInputSpaceDimension (void) const |
| bool | GetInverse (Self *) const |
| virtual const JacobianType & | GetJacobian (const InputPointType &point) const |
| const MetaDataDictionary & | GetMetaDataDictionary (void) const |
| MetaDataDictionary & | GetMetaDataDictionary (void) |
| virtual unsigned long | GetMTime () const |
| virtual const char * | GetNameOfClass () const |
| virtual unsigned int | GetNumberOfParameters (void) const |
| unsigned int | GetOutputSpaceDimension (void) const |
| virtual const ParametersType & | GetParameters (void) const |
| virtual int | GetReferenceCount () const |
| virtual PointSetType * | GetSourceLandmarks () |
| virtual double | GetStiffness () |
| virtual PointSetType * | GetTargetLandmarks () |
| virtual std::string | GetTransformTypeAsString () const |
| bool | HasObserver (const EventObject &event) const |
| void | InvokeEvent (const EventObject &) const |
| void | InvokeEvent (const EventObject &) |
| itkStaticConstMacro (OutputSpaceDimension, unsigned int, NOutputDimensions) | |
| Dimension of the domain space * | itkStaticConstMacro (InputSpaceDimension, unsigned int, NInputDimensions) |
| itkStaticConstMacro (SpaceDimension, unsigned int, NDimensions) | |
| itkStaticConstMacro (SpaceDimension, unsigned int, Superclass::SpaceDimension) | |
| virtual void | Modified () const |
| void | Print (std::ostream &os, Indent indent=0) const |
| virtual void | Register () const |
| void | RemoveAllObservers () |
| void | RemoveObserver (unsigned long tag) |
| virtual void | SetAlpha (TScalarType _arg) |
| void | SetDebug (bool debugFlag) const |
| virtual void | SetFixedParameters (const ParametersType &) |
| void | SetMetaDataDictionary (const MetaDataDictionary &rhs) |
| virtual void | SetParameters (const ParametersType &) |
| virtual void | SetParametersByValue (const ParametersType &p) |
| virtual void | SetReferenceCount (int) |
| virtual void | SetSourceLandmarks (PointSetType *) |
| Stiffness of the spline A stiffness of zero results in the *standard interpolating spline A non zero stiffness allows the *spline to approximate rather than interpolate the landmarks *Stiffness values are usually rather typically in the range *of to The approximating spline formulation is based on *the short paper by R K H Stiehl Thin Plate *Spline Approximation for Image Registration In th *International Conference of the IEEE Engineering in Medicine and *Biology Society *virtual void | SetStiffness (double _arg) |
| virtual void | SetTargetLandmarks (PointSetType *) |
| virtual OutputCovariantVectorType | TransformCovariantVector (const InputCovariantVectorType &) const |
| virtual OutputPointType | TransformPoint (const InputPointType &thisPoint) const |
| virtual OutputVnlVectorType | TransformVector (const InputVnlVectorType &) const |
| virtual OutputVectorType | TransformVector (const InputVectorType &) const |
| virtual void | UnRegister () const |
| virtual void | UpdateParameters (void) const |
Static Public Member Functions | |
| static void | BreakOnError () |
| static bool | GetGlobalWarningDisplay () |
| static void | GlobalWarningDisplayOff () |
| static void | GlobalWarningDisplayOn () |
| static Pointer | New () |
| This is a global flag that controls whether any warning *or error messages are displayed *static void | SetGlobalWarningDisplay (bool flag) |
Public Attributes | |
| Allow people to add remove invoke observers(callbacks) to any ITK *object.This is an implementation of the subject/observer design *pattern.An observer is added by specifying an event to respond to *and an itk unsigned lon | AddObserver )(const EventObject &event, Command *) const |
| This is a global flag that controls whether any | debug |
| return | m_Jacobian |
| PointSetPointer | m_SourceLandmarks |
| PointSetPointer | m_TargetLandmarks |
| Stiffness of the spline A stiffness of zero results in the *standard interpolating spline A non zero stiffness allows the *spline to approximate rather than interpolate the landmarks *Stiffness values are usually rather typically in the range *of to The approximating spline formulation is based on *the short paper by R K | Rohr |
| Stiffness of the spline A stiffness of zero results in the *standard interpolating spline A non zero stiffness allows the *spline to approximate rather than interpolate the landmarks *Stiffness values are usually rather | small |
| Stiffness of the spline A stiffness of zero results in the *standard interpolating spline A non zero stiffness allows the *spline to approximate rather than interpolate the landmarks *Stiffness values are usually rather typically in the range *of to The approximating spline formulation is based on *the short paper by R | Sprengel |
| Compute the Jacobian of the transformation **This method computes the Jacobian matrix of the transformation *at a given input point The rank of the Jacobian will also indicate *if the transform is invertible at this point **The Jacobian is be expressed as a matrix of partial derivatives of the *output point components with respect to the parameters that defined *the | transform |
Protected Types | |
| typedef Superclass::GMatrixType | GMatrixType |
Protected Member Functions | |
| void | ComputeD () |
| virtual void | ComputeDeformationContribution (const InputPointType &inputPoint, OutputPointType &result) const |
| const GMatrixType & | ComputeG (const InputVectorType &x) const |
| void | ComputeK () |
| void | ComputeL () |
| void | ComputeP () |
| virtual const GMatrixType & | ComputeReflexiveG (PointsIterator) const |
| void | ComputeY () |
| ElasticBodySplineKernelTransform () | |
| bool | PrintObservers (std::ostream &os, Indent indent) const |
| void | PrintSelf (std::ostream &os, Indent indent) const |
| virtual void | PrintTrailer (std::ostream &os, Indent indent) const |
| void | ReorganizeW (void) |
| Transform (unsigned int Dimension, unsigned int NumberOfParameters) | |
| Transform () | |
| virtual | ~ElasticBodySplineKernelTransform () |
Protected Attributes | |
| TScalarType | m_Alpha |
| AMatrixType | m_AMatrix |
| BMatrixType | m_BVector |
| VectorSetPointer | m_Displacements |
| DMatrixType | m_DMatrix |
| ParametersType | m_FixedParameters |
| GMatrixType | m_GMatrix |
| IMatrixType | m_I |
| JacobianType | m_Jacobian |
| KMatrixType | m_KMatrix |
| LMatrixType | m_LMatrix |
| ParametersType | m_Parameters |
| PMatrixType | m_PMatrix |
| int | m_ReferenceCount |
| SimpleFastMutexLock | m_ReferenceCountLock |
| double | m_Stiffness |
| WMatrixType | m_WMatrix |
| bool | m_WMatrixComputed |
| YMatrixType | m_YMatrix |
| Methods invoked by virtual Print() to print information about the object *including superclasses.Typically not called by the user(use Print()*instead) but used in the hierarchical print process to combine the *output of several classes.*/virtual void PrintSelf(std voi | PrintHeader )(std::ostream &os, Indent indent) const |
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'A' matrix typedef. Rotational part of the Affine component Definition at line 211 of file itkKernelTransform.h. |
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'B' matrix typedef. Translational part of the Affine component Definition at line 214 of file itkKernelTransform.h. |
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Column matrix typedef. Definition at line 220 of file itkKernelTransform.h. |
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Reimplemented from itk::KernelTransform< TScalarType, NDimensions >. Definition at line 50 of file itkElasticBodySplineKernelTransform.h. |
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'D' matrix typedef. Deformation component Definition at line 208 of file itkKernelTransform.h. |
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These (rather redundant) typedefs are needed because on SGI, typedefs are not inherited Reimplemented from itk::KernelTransform< TScalarType, NDimensions >. Definition at line 95 of file itkElasticBodySplineKernelTransform.h. |
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'I' (identity) matrix typedef. Definition at line 140 of file itkKernelTransform.h. |
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Standard covariant vector type for this class Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >. Definition at line 84 of file itkElasticBodySplineKernelTransform.h. |
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These (rather redundant) typedefs are needed because on SGI, typedefs are not inherited Reimplemented from itk::KernelTransform< TScalarType, NDimensions >. Definition at line 76 of file itkElasticBodySplineKernelTransform.h. |
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Standard vector type for this class. Reimplemented from itk::KernelTransform< TScalarType, NDimensions >. Definition at line 82 of file itkElasticBodySplineKernelTransform.h. |
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Standard vnl_vector type for this class. Reimplemented in itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >, itk::IdentityTransform< TScalarType, NDimensions >, itk::ScaleLogarithmicTransform< TScalarType, NDimensions >, itk::ScaleTransform< TScalarType, NDimensions >, and itk::TranslationTransform< TScalarType, NDimensions >. Definition at line 110 of file itkTransform.h. |
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Jacobian type. Reimplemented from itk::KernelTransform< TScalarType, NDimensions >. Definition at line 65 of file itkElasticBodySplineKernelTransform.h. |
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'K' matrix typedef. Definition at line 196 of file itkKernelTransform.h. |
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'L' matrix typedef. Definition at line 193 of file itkKernelTransform.h. |
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Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >. Definition at line 85 of file itkElasticBodySplineKernelTransform.h. |
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Reimplemented from itk::KernelTransform< TScalarType, NDimensions >. Definition at line 81 of file itkElasticBodySplineKernelTransform.h. |
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Reimplemented from itk::KernelTransform< TScalarType, NDimensions >. Definition at line 83 of file itkElasticBodySplineKernelTransform.h. |
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Parameters type. Reimplemented from itk::KernelTransform< TScalarType, NDimensions >. Definition at line 62 of file itkElasticBodySplineKernelTransform.h. |
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'P' matrix typedef. Definition at line 199 of file itkKernelTransform.h. |
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Reimplemented from itk::KernelTransform< TScalarType, NDimensions >. Definition at line 49 of file itkElasticBodySplineKernelTransform.h. |
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Definition at line 111 of file itkKernelTransform.h. |
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Definition at line 109 of file itkKernelTransform.h. |
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Definition at line 108 of file itkKernelTransform.h. |
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PointList typedef. This type is used for maintaining lists of points, specifically, the source and target landmark lists. Definition at line 106 of file itkKernelTransform.h. |
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Definition at line 107 of file itkKernelTransform.h. |
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Reimplemented in itk::ThinPlateR2LogRSplineKernelTransform< TScalarType, NDimensions >, itk::ThinPlateSplineKernelTransform< TScalarType, NDimensions >, and itk::VolumeSplineKernelTransform< TScalarType, NDimensions >. Definition at line 110 of file itkKernelTransform.h. |
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Row matrix typedef. Definition at line 217 of file itkKernelTransform.h. |
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Scalar type. Reimplemented from itk::KernelTransform< TScalarType, NDimensions >. Definition at line 56 of file itkElasticBodySplineKernelTransform.h. |
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Standard class typedefs. Reimplemented from itk::KernelTransform< TScalarType, NDimensions >. Definition at line 45 of file itkElasticBodySplineKernelTransform.h. |
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Reimplemented from itk::KernelTransform< TScalarType, NDimensions >. Definition at line 47 of file itkElasticBodySplineKernelTransform.h. |
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Definition at line 115 of file itkKernelTransform.h. |
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VectorSet typedef. Definition at line 114 of file itkKernelTransform.h. |
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'W' matrix typedef. Definition at line 205 of file itkKernelTransform.h. |
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'Y' matrix typedef. Definition at line 202 of file itkKernelTransform.h. |
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This method is called when itkExceptionMacro executes. It allows the debugger to break on error. |
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Compute displacements |
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Compute the contribution of the landmarks weighted by the kernel funcion to the global deformation of the space Reimplemented in itk::ThinPlateR2LogRSplineKernelTransform< TScalarType, NDimensions >, itk::ThinPlateSplineKernelTransform< TScalarType, NDimensions >, and itk::VolumeSplineKernelTransform< TScalarType, NDimensions >. |
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Compute G(x) For the elastic body spline, this is: G(x) = [alpha*r(x)^2*I - 3*x*x']*r(x)
I = identity matrix Reimplemented from itk::KernelTransform< TScalarType, NDimensions >. |
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Compute K matrix. |
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Compute L matrix. |
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Compute P matrix. |
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Compute a G(x) for a point to itself (i.e. for the block diagonal elements of the matrix K. Parameter indicates for which landmark the reflexive G is to be computed. The default implementation for the reflexive contribution is a diagonal matrix where the diagonal elements are the stiffness of the spline. |
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Compute W matrix. |
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Compute Y matrix. |
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Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class. Reimplemented from itk::LightObject. |
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Turn debugging output off. |
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Turn debugging output on. |
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Delete an itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C delete method will not work with reference counting. |
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Get alpha |
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Get the command associated with the given tag. NOTE: This returns a pointer to a Command, but it is safe to asign this to a Command::Pointer. Since Command inherits from LightObject, at this point in the code, only a pointer or a reference to the Command can be used. |
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Get the value of the debug flag. |
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Get the displacements list, which we will denote |
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Get Transform Fixed Parameters - Gets the Target Landmarks Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >. |
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Get the size of the input space Implements itk::TransformBase. Definition at line 87 of file itkTransform.h. |
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Return the inverse of the transform. The inverse is recomputed if it has been modified Reimplemented in itk::ScaleTransform< TScalarType, NDimensions >, and itk::TranslationTransform< TScalarType, NDimensions >. Definition at line 209 of file itkTransform.h. |
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Compute the Jacobian Matrix of the transformation at one point |
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Run-time type information (and related methods). Reimplemented from itk::KernelTransform< TScalarType, NDimensions >. |
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Return the number of parameters that completely define the Transfom Implements itk::TransformBase. Reimplemented in itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >, and itk::TranslationTransform< TScalarType, NDimensions >. Definition at line 204 of file itkTransform.h. |
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Get the size of the output space Implements itk::TransformBase. Definition at line 90 of file itkTransform.h. |
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Get the Transformation Parameters - Gets the Source Landmarks Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >. |
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Gets the reference count on this object. Definition at line 98 of file itkLightObject.h. |
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Get the source landmarks list, which we will denote |
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Get the target landmarks list, which we will denote |
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Generate a platform independant name Implements itk::TransformBase. |
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Definition at line 100 of file itkObject.h. References itk::Object::SetGlobalWarningDisplay(). |
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Definition at line 98 of file itkObject.h. References itk::Object::SetGlobalWarningDisplay(). |
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Return true if an observer is registered for this event. |
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Call Execute on all the Commands observing this event id. The actions triggered by this call doesn't modify this object. |
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Call Execute on all the Commands observing this event id. |
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Dimension of the domain space. |
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Dimension of the domain space. |
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New macro for creation of through a Smart Pointer Reimplemented from itk::KernelTransform< TScalarType, NDimensions >. |
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Cause the object to print itself out. |
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Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes. Reimplemented from itk::KernelTransform< TScalarType, NDimensions >. |
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Increase the reference count (mark as used by another object). Reimplemented from itk::LightObject. |
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Remove all observers . |
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Remove the observer with this tag value. |
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Reorganize the components of W into D (deformable), A (rotation part of affine) and B (translational part of affine ) components.
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Set alpha. Alpha is related to Poisson's Ratio ( |
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Set the value of the debug flag. A non-zero value turns debugging on. |
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Set Transform Fixed Parameters: To support the transform file writer this function was added to set the target landmarks similar to the SetParameters function setting the source landmarks Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >. |
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Referenced by itk::Object::GlobalWarningDisplayOff(), and itk::Object::GlobalWarningDisplayOn(). |
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Set the Transformation Parameters and update the internal transformation. The parameters represent the source landmarks. Each landmark point is represented by NDimensions doubles. All the landmarks are concatenated to form one flat Array<double>. Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >. |
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Set the transformation parameters and update internal transformation. This method forces the transform to copy the parameters. The default implementation is to call SetParameters. This call must be overridden if the transform normally implements SetParameters by keeping a reference to the parameters.
Implements itk::TransformBase. Reimplemented in itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >. Definition at line 151 of file itkTransform.h. |
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Sets the reference count (use with care) Reimplemented from itk::LightObject. |
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Set the source landmarks list. |
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Set the target landmarks list. |
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Method to transform a CovariantVector. Reimplemented in itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >, itk::IdentityTransform< TScalarType, NDimensions >, itk::ScaleTransform< TScalarType, NDimensions >, and itk::TranslationTransform< TScalarType, NDimensions >. Definition at line 130 of file itkTransform.h. |
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Compute the position of point in the new space Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >. |
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Method to transform a vnl_vector. Reimplemented in itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >, itk::IdentityTransform< TScalarType, NDimensions >, itk::ScaleTransform< TScalarType, NDimensions >, and itk::TranslationTransform< TScalarType, NDimensions >. Definition at line 126 of file itkTransform.h. |
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Method to transform a vector. Reimplemented in itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >, itk::IdentityTransform< TScalarType, NDimensions >, itk::ScaleTransform< TScalarType, NDimensions >, and itk::TranslationTransform< TScalarType, NDimensions >. Definition at line 122 of file itkTransform.h. |
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Decrease the reference count (release by another object). Reimplemented from itk::LightObject. |
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Update the Parameters array from the landmarks corrdinates. |
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Definition at line 94 of file itkObject.h. |
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alpha, Alpha is related to Poisson's Ratio ($$) as $ = 12 ( 1 - ) - 1$ Definition at line 112 of file itkElasticBodySplineKernelTransform.h. |
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Rotatinoal/Shearing part of the Affine component of the Transformation Definition at line 302 of file itkKernelTransform.h. |
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Translational part of the Affine component of the Transformation Definition at line 305 of file itkKernelTransform.h. |
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The list of displacements. d[i] = q[i] - p[i]; Definition at line 277 of file itkKernelTransform.h. |
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The Deformation matrix. This is an auxiliary matrix that will hold the Deformation (non-affine) part of the transform. Those are the coefficients that will multiply the Kernel function Definition at line 299 of file itkKernelTransform.h. |
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Definition at line 221 of file itkTransform.h. |
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The G matrix. It is made mutable because m_GMatrix was made an ivar only to avoid copying the matrix at return time Definition at line 310 of file itkKernelTransform.h. |
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Identity matrix. Definition at line 316 of file itkKernelTransform.h. |
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Reimplemented in itk::IdentityTransform< TScalarType, NDimensions >. Definition at line 222 of file itkTransform.h. |
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Reimplemented in itk::IdentityTransform< TScalarType, NDimensions >. Definition at line 199 of file itkTransform.h. |
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The K matrix. Definition at line 283 of file itkKernelTransform.h. |
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The L matrix. Definition at line 280 of file itkKernelTransform.h. |
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Definition at line 217 of file itkTransform.h. |
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The P matrix. Definition at line 286 of file itkKernelTransform.h. |
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Number of uses of this object by other objects. Definition at line 119 of file itkLightObject.h. |
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Mutex lock to protect modification to the reference count Definition at line 122 of file itkLightObject.h. |
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The list of source landmarks, denoted 'p'. Definition at line 223 of file itkKernelTransform.h. |
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Stiffness parameter Definition at line 273 of file itkKernelTransform.h. |
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The list of target landmarks, denoted 'q'. Definition at line 226 of file itkKernelTransform.h. |
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The W matrix. Definition at line 292 of file itkKernelTransform.h. |
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Has the W matrix been computed? Definition at line 313 of file itkKernelTransform.h. |
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The Y matrix. Definition at line 289 of file itkKernelTransform.h. |
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Definition at line 171 of file itkKernelTransform.h. |
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Definition at line 171 of file itkKernelTransform.h. |
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Definition at line 171 of file itkKernelTransform.h. |
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Reimplemented in itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >, and itk::IdentityTransform< TScalarType, NDimensions >. Definition at line 167 of file itkTransform.h. |
1.4.2 written by Dimitri van Heesch,
© 1997-2000