#include <itkGeodesicActiveContourShapePriorLevelSetFunction.h>
Inheritance diagram for itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >:


, which has values close to zero in regions near edges (or high image gradient) and values close to one in regions with relatively constant intensity. Typically, the edge potential map is a function of the gradient, for example:
where
is image intensity and
is the derivative of Gaussian operator.
The edge potential image is set via the SetFeatureImage() method.
In this function both the propagation term
and the curvature spatial modifier term
are taken directly from the edge potential image such that:
An advection term
is constructed from the negative gradient of the edge potential image.
This term behaves like a doublet attracting the contour to the edges.
This class extends the basic LevelSetFunction with a shape prior term as developed in [1].

where
is the signed distance function from a target shape and
is a scalar constant.
The target shape signed distance function is supplied through a ShapeSignedDistanceFunction object. Typically, the shape is a function of a set of parameters.
Definition at line 91 of file itkGeodesicActiveContourShapePriorLevelSetFunction.h.
Public Types | |
| typedef SmartPointer< const Self > | ConstPointer |
| typedef Superclass::ContinuousIndexType | ContinuousIndexType |
| typedef ZeroFluxNeumannBoundaryCondition< ImageType > | DefaultBoundaryConditionType |
| typedef TFeatureImageType | FeatureImageType |
| typedef Superclass::FeatureScalarType | FeatureScalarType |
| typedef Superclass::FloatOffsetType | FloatOffsetType |
| typedef Superclass::GlobalDataStruct | GlobalDataStruct |
| typedef Superclass::ImageType | ImageType |
| typedef Superclass::IndexType | IndexType |
| typedef LinearInterpolateImageFunction< ImageType > | InterpolatorType |
| typedef Superclass::NeighborhoodType | NeighborhoodType |
| typedef double | PixelRealType |
| typedef Superclass::PixelType | PixelType |
| typedef SmartPointer< Self > | Pointer |
| typedef Superclass::RadiusType | RadiusType |
| typedef Superclass::ScalarValueType | ScalarValueType |
| typedef GeodesicActiveContourShapePriorLevelSetFunction | Self |
| typedef ShapeFunctionType::ConstPointer | ShapeFunctionPointer |
| typedef ShapeSignedDistanceFunction< double, itkGetStaticConstMacro(ImageDimension) | ShapeFunctionType ) |
| typedef ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType > | Superclass |
| typedef Superclass::TimeStepType | TimeStepType |
| typedef Superclass::VectorImageType | VectorImageType |
| typedef VectorLinearInterpolateImageFunction< VectorImageType > | VectorInterpolatorType |
| typedef Superclass::VectorType | VectorType |
Public Member Functions | |
| virtual void | AllocateAdvectionImage () |
| virtual void | AllocateSpeedImage () |
| virtual void | CalculateAdvectionImage () |
| virtual void | CalculateSpeedImage () |
| virtual ScalarValueType | Compute3DMinimalCurvature (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *gd=0) |
| *virtual ScalarValueType | ComputeCurvatureTerm (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *gd=0) |
| virtual TimeStepType | ComputeGlobalTimeStep (void *globalData) const |
| virtual ScalarValueType | ComputeMeanCurvature (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *gd=0) |
| virtual ScalarValueType | ComputeMinimalCurvature (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *gd=0) |
| virtual PixelType | ComputeUpdate (const NeighborhoodType &neighborhood, void *globalData, const FloatOffsetType &=FloatOffsetType(0.0)) |
| virtual Pointer | CreateAnother () const |
| virtual ScalarValueType | CurvatureSpeed (const NeighborhoodType &neighborhood, const FloatOffsetType &offset, GlobalDataStruct *gd) const |
| virtual void | Delete () |
| Get Set the image used as the advection field in the level set equation *virtual VectorImageType * | GetAdvectionImage () const |
| ScalarValueType | GetAdvectionWeight () const |
| ScalarValueType | GetCurvatureWeight () const |
| double | GetDerivativeSigma () |
| ScalarValueType | GetEpsilonMagnitude () const |
| Set Get the image which will be used to calculate the speed function *virtual const FeatureImageType * | GetFeatureImage () const |
| Returns a pointer to a global data structure for computing time step *virtual void * | GetGlobalDataPointer () const |
| ScalarValueType | GetLaplacianSmoothingWeight () const |
| virtual const char * | GetNameOfClass () const |
| ScalarValueType | GetPropagationWeight () const |
| const RadiusType & | GetRadius () const |
| virtual int | GetReferenceCount () const |
| const ShapeFunctionType * | GetShapeFunction () const |
| ScalarValueType | GetShapePriorWeight () const |
| Get Set the image used as the speed function in the level set equation *virtual ImageType * | GetSpeedImage () |
| bool | GetUseMinimalCurvature () const |
| virtual void | Initialize (const RadiusType &r) |
| virtual void | InitializeIteration () |
| itkStaticConstMacro (ImageDimension, unsigned int, ImageType::ImageDimension) | |
| itkStaticConstMacro (ImageDimension, unsigned int, Superclass::ImageDimension) | |
| virtual ScalarValueType | LaplacianSmoothingSpeed (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *=0) const |
| void | Print (std::ostream &os, Indent indent=0) const |
| virtual void | Register () const |
| virtual void | ReleaseGlobalDataPointer (void *GlobalData) const |
| virtual void | ReverseExpansionDirection () |
| void | SetAdvectionImage (VectorImageType *s) |
| Alpha Scales all advection term values *virtual void | SetAdvectionWeight (const ScalarValueType a) |
| Gamma Scales all curvature weight values *virtual void | SetCurvatureWeight (const ScalarValueType c) |
| Set Get the sigma for the Gaussian kernel used to compute the gradient *of the feature image needed for the advection term of the equation *void | SetDerivativeSigma (const double v) |
| Epsilon *void | SetEpsilonMagnitude (const ScalarValueType e) |
| virtual void | SetFeatureImage (const FeatureImageType *f) |
| Weight of the laplacian smoothing term *void | SetLaplacianSmoothingWeight (const ScalarValueType c) |
| Beta Scales all propagation term values *virtual void | SetPropagationWeight (const ScalarValueType p) |
| void | SetRadius (const RadiusType &r) |
| virtual void | SetReferenceCount (int) |
| Set the ScaleCoefficients for the difference *operators The defaults a These can be set to take the image *spacing into account *void | SetScaleCoefficients (PixelRealType vals[ImageDimension]) |
| The ShapeFunction encapsulates the signed distance to the shape used to *influence the evolution of the level set *void | SetShapeFunction (const ShapeFunctionType *ptr) |
| Zeta The ShapePriorWeight scales the shape prior term values *void | SetShapePriorWeight (const ScalarValueType p) |
| void | SetSpeedImage (ImageType *s) |
| *void | SetUseMinimalCurvature (bool b) |
| virtual void | UnRegister () const |
| void | UseMinimalCurvatureOff () |
| void | UseMinimalCurvatureOn () |
Static Public Member Functions | |
| static void | BreakOnError () |
| static double | GetMaximumCurvatureTimeStep () |
| static double | GetMaximumPropagationTimeStep () |
| static Pointer | New () |
| Set Get the maximum constraint for the curvature term factor in the time step calculation Changing this value from the default is not recommended or but can be used to speed up the surface evolution at the risk of creating an unstable solution *static void | SetMaximumCurvatureTimeStep (double n) |
| Set Get the maximum constraint for the scalar vector term factor of the time step calculation Changing this value from the default is not recommended or but can be used to speed up the surface evolution at the risk of creating an unstable solution *static void | SetMaximumPropagationTimeStep (double n) |
Public Attributes | |
| Set Get the maximum constraint for the scalar vector term factor of the time step calculation Changing this value from the default is not recommended or | necessary |
| Set Get the maximum constraint for the curvature term factor in the time step calculation Changing this value from the default is not recommended or | necessary |
| Returns a pointer to a global data structure that is passed to this *object from the solver at each calculation The idea is that the solver *holds the state of any global values needed to calculate the time | step |
Protected Member Functions | |
| virtual VectorType | AdvectionField (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *gd) const |
| GeodesicActiveContourShapePriorLevelSetFunction (const Self &) | |
| GeodesicActiveContourShapePriorLevelSetFunction () | |
| void | operator= (const Self &) |
| void | PrintSelf (std::ostream &os, Indent indent) const |
| virtual void | PrintTrailer (std::ostream &os, Indent indent) const |
| virtual ScalarValueType | PropagationSpeed (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *gd) const |
| virtual | ~GeodesicActiveContourShapePriorLevelSetFunction () |
Static Protected Member Functions | |
| static VectorType | InitializeZeroVectorConstant () |
Protected Attributes | |
| VectorImageType::Pointer | m_AdvectionImage |
| ScalarValueType | m_AdvectionWeight |
| ::vcl_size_t | m_Center |
| ScalarValueType | m_CurvatureWeight |
| ScalarValueType | m_EpsilonMagnitude |
| FeatureImageType::ConstPointer | m_FeatureImage |
| InterpolatorType::Pointer | m_Interpolator |
| ScalarValueType | m_LaplacianSmoothingWeight |
| ScalarValueType | m_PropagationWeight |
| RadiusType | m_Radius |
| int | m_ReferenceCount |
| SimpleFastMutexLock | m_ReferenceCountLock |
| PixelRealType | m_ScaleCoefficients [ImageDimension] |
| ImageType::Pointer | m_SpeedImage |
| bool | m_UseMinimalCurvature |
| Functor::VectorCast< typename VectorInterpolatorType::OutputType, VectorType > | m_VectorCast |
| VectorInterpolatorType::Pointer | m_VectorInterpolator |
| ::vcl_size_t | m_xStride [itkGetStaticConstMacro(ImageDimension)] |
| Methods invoked by virtual Print() to print information about the object *including superclasses.Typically not called by the user(use Print()*instead) but used in the hierarchical print process to combine the *output of several classes.*/virtual void PrintSelf(std voi | PrintHeader )(std::ostream &os, Indent indent) const |
| std::slice | x_slice [itkGetStaticConstMacro(ImageDimension)] |
Static Protected Attributes | |
| static double | m_DT |
| static double | m_WaveDT |
| static VectorType | m_ZeroVectorConstant |
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Reimplemented from itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >. Definition at line 99 of file itkGeodesicActiveContourShapePriorLevelSetFunction.h. |
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Continuous index type recognized by the interpolator Reimplemented from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >. Definition at line 81 of file itkShapePriorSegmentationLevelSetFunction.h. |
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The default boundary condition for finite difference functions that is used unless overridden in the Evaluate() method. Definition at line 93 of file itkFiniteDifferenceFunction.h. |
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Reimplemented from itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >. Definition at line 100 of file itkGeodesicActiveContourShapePriorLevelSetFunction.h. |
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Reimplemented from itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >. Definition at line 113 of file itkGeodesicActiveContourShapePriorLevelSetFunction.h. |
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A floating point offset from an image grid location. Used for interpolation among grid values in a neighborhood. Reimplemented from itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >. Definition at line 115 of file itkGeodesicActiveContourShapePriorLevelSetFunction.h. |
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A global data type used to store values needed to compute the time step. Reimplemented from itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >. Definition at line 117 of file itkGeodesicActiveContourShapePriorLevelSetFunction.h. |
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Extract some parameters from the superclass. Reimplemented from itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >. Definition at line 107 of file itkGeodesicActiveContourShapePriorLevelSetFunction.h. |
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Reimplemented from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >. Definition at line 80 of file itkShapePriorSegmentationLevelSetFunction.h. |
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Define a scalar interpolator Definition at line 78 of file itkSegmentationLevelSetFunction.h. |
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The type of data structure that is passed to this function object to evaluate at a pixel that does not lie on a data set boundary. Reimplemented from itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >. Definition at line 111 of file itkGeodesicActiveContourShapePriorLevelSetFunction.h. |
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Definition at line 82 of file itkFiniteDifferenceFunction.h. |
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Reimplemented from itk::LevelSetFunction< TImageType >. Definition at line 78 of file itkShapePriorSegmentationLevelSetFunction.h. |
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Reimplemented from itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >. Definition at line 98 of file itkGeodesicActiveContourShapePriorLevelSetFunction.h. |
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Neighborhood radius type Reimplemented from itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >. Definition at line 114 of file itkGeodesicActiveContourShapePriorLevelSetFunction.h. |
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Reimplemented from itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >. Definition at line 112 of file itkGeodesicActiveContourShapePriorLevelSetFunction.h. |
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Standard class typedefs. Reimplemented from itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >. Definition at line 96 of file itkGeodesicActiveContourShapePriorLevelSetFunction.h. |
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Definition at line 90 of file itkShapePriorSegmentationLevelSetFunction.h. |
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ShapeFunction typedef support. Definition at line 89 of file itkShapePriorSegmentationLevelSetFunction.h. |
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Reimplemented from itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >. Definition at line 97 of file itkGeodesicActiveContourShapePriorLevelSetFunction.h. |
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Convenient typedefs. Reimplemented from itk::LevelSetFunction< TImageType >. Definition at line 79 of file itkShapePriorSegmentationLevelSetFunction.h. |
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Define an image type for the advection field. Reimplemented from itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >. Definition at line 116 of file itkGeodesicActiveContourShapePriorLevelSetFunction.h. |
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Define a vector interpolator Definition at line 81 of file itkSegmentationLevelSetFunction.h. |
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The vector type that will be used in the calculations. Reimplemented from itk::LevelSetFunction< TImageType >. Definition at line 67 of file itkSegmentationLevelSetFunction.h. |
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Definition at line 153 of file itkGeodesicActiveContourShapePriorLevelSetFunction.h. |
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Definition at line 163 of file itkGeodesicActiveContourShapePriorLevelSetFunction.h. |
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Advection field. Returns a vector from the computed advectionfield. Reimplemented from itk::LevelSetFunction< TImageType >. |
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Allocates the image that will be used for the level set function's Advection field term. See LevelSetFunction for more information. |
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Allocates the image that will be used for the level set function's Propagation Speed term. See LevelSetFunction for more information. |
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This method is called when itkExceptionMacro executes. It allows the debugger to break on error. |
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Compute the advection field from feature image. Reimplemented from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >. |
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Compute speed image from feature image. Reimplemented from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >. |
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Compute global time step from the global data structure. Reimplemented from itk::LevelSetFunction< TImageType >. |
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Compute the equation value with the additional shape prior term. Reimplemented from itk::LevelSetFunction< TImageType >. |
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Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class. Reimplemented in itk::Object. |
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The curvature speed is same as the propagation speed. Reimplemented from itk::LevelSetFunction< TImageType >. Definition at line 130 of file itkGeodesicActiveContourShapePriorLevelSetFunction.h. |
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Delete an itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C delete method will not work with reference counting. |
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Definition at line 100 of file itkSegmentationLevelSetFunction.h. |
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Definition at line 150 of file itkLevelSetFunction.h. |
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Definition at line 164 of file itkLevelSetFunction.h. |
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Definition at line 138 of file itkGeodesicActiveContourShapePriorLevelSetFunction.h. |
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Definition at line 178 of file itkLevelSetFunction.h. |
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Definition at line 87 of file itkSegmentationLevelSetFunction.h. |
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Returns a pointer to a global data structure that is passed to this object from the solver at each calculation. The idea is that the solver holds the state of any global values needed to calculate the time step, while the equation object performs the actual calculations. The global data should also be initialized in this method. Reimplemented from itk::LevelSetFunction< TImageType >. Definition at line 124 of file itkShapePriorSegmentationLevelSetFunction.h. |
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Definition at line 171 of file itkLevelSetFunction.h. |
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Definition at line 272 of file itkLevelSetFunction.h. |
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Definition at line 286 of file itkLevelSetFunction.h. |
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Run-time type information (and related methods) Reimplemented from itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >. |
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Definition at line 157 of file itkLevelSetFunction.h. |
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Returns the radius of the neighborhood this FiniteDifferenceFunction needs to perform its calculations. Definition at line 142 of file itkFiniteDifferenceFunction.h. |
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Gets the reference count on this object. Definition at line 98 of file itkLightObject.h. |
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Definition at line 103 of file itkShapePriorSegmentationLevelSetFunction.h. |
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Definition at line 95 of file itkShapePriorSegmentationLevelSetFunction.h. |
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Definition at line 94 of file itkSegmentationLevelSetFunction.h. |
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Definition at line 250 of file itkLevelSetFunction.h. |
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This method creates the appropriate member variable operators for the level-set calculations. The argument to this function is a the radius necessary for performing the level-set calculations. Reimplemented from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >. Definition at line 142 of file itkGeodesicActiveContourShapePriorLevelSetFunction.h. |
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This method's only purpose is to initialize the zero vector constant. |
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Save image dimension. |
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Extract some parameters from the superclass. Reimplemented from itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >. |
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Laplacian smoothing speed. Can be used to spatially modify the effects of laplacian smoothing of the level set function Definition at line 142 of file itkLevelSetFunction.h. |
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Method for creation through the object factory. Reimplemented from itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >. |
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Reimplemented from itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >. |
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Cause the object to print itself out. |
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Reimplemented from itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >. Definition at line 168 of file itkGeodesicActiveContourShapePriorLevelSetFunction.h. References HardConnectedComponentImageFilter::PrintSelf(). |
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Returns the propagation speed from the precalculated speed image. Reimplemented from itk::LevelSetFunction< TImageType >. |
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Increase the reference count (mark as used by another object). Reimplemented in itk::Object. |
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Release the global data structure. Reimplemented from itk::LevelSetFunction< TImageType >. Definition at line 136 of file itkShapePriorSegmentationLevelSetFunction.h. |
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Determines whether Positive or Negative speed terms will cause surface expansion. This method flips the sign of all of the speed, advection, etc terms. By convention, filters should be written so that POSITIVE speed terms cause surface expansion. Calling this method will toggle between the standard POSITIVE EXPANSION convention and the nonstandard NEGATIVE EXPANSION convention. IMPORTANT: When adding terms to the level-set equation through subclassing you may need to override this function so that your new terms will be properly adjusted. |
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Reimplemented in itk::LaplacianSegmentationLevelSetFunction< TImageType, TFeatureImageType >. Definition at line 148 of file itkLevelSetFunction.h. |
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Definition at line 162 of file itkLevelSetFunction.h. |
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Definition at line 136 of file itkGeodesicActiveContourShapePriorLevelSetFunction.h. |
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Definition at line 176 of file itkLevelSetFunction.h. |
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Definition at line 89 of file itkSegmentationLevelSetFunction.h. |
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Definition at line 169 of file itkLevelSetFunction.h. |
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Definition at line 268 of file itkLevelSetFunction.h. |
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Definition at line 282 of file itkLevelSetFunction.h. |
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Definition at line 155 of file itkLevelSetFunction.h. |
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Sets the radius of the neighborhood this FiniteDifferenceFunction needs to perform its calculations. Definition at line 137 of file itkFiniteDifferenceFunction.h. |
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Sets the reference count on this object. This is a dangerous method, use it with care. Reimplemented in itk::Object. |
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Definition at line 148 of file itkFiniteDifferenceFunction.h. |
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Definition at line 101 of file itkShapePriorSegmentationLevelSetFunction.h. |
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Definition at line 93 of file itkShapePriorSegmentationLevelSetFunction.h. |
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Definition at line 246 of file itkLevelSetFunction.h. |
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Decrease the reference count (release by another object). Reimplemented in itk::Object. |
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Definition at line 258 of file itkLevelSetFunction.h. |
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Definition at line 254 of file itkLevelSetFunction.h. |
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The image holding the advection field for front propation Definition at line 151 of file itkSegmentationLevelSetFunction.h. |
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Alpha. Definition at line 330 of file itkLevelSetFunction.h. |
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The offset of the center pixel in the neighborhood. Definition at line 312 of file itkLevelSetFunction.h. |
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Gamma. Definition at line 336 of file itkLevelSetFunction.h. |
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Definition at line 306 of file itkLevelSetFunction.h. |
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Epsilon magnitude controls the lower limit for gradient magnitude. Definition at line 327 of file itkLevelSetFunction.h. |
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The image whose features will be used to create a speed image Definition at line 145 of file itkSegmentationLevelSetFunction.h. |
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Definition at line 175 of file itkSegmentationLevelSetFunction.h. |
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Laplacean smoothing term Definition at line 339 of file itkLevelSetFunction.h. |
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Beta. Definition at line 333 of file itkLevelSetFunction.h. |
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Definition at line 194 of file itkFiniteDifferenceFunction.h. |
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Number of uses of this object by other objects. Definition at line 119 of file itkLightObject.h. |
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Mutex lock to protect modification to the reference count Definition at line 122 of file itkLightObject.h. |
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Definition at line 195 of file itkFiniteDifferenceFunction.h. |
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The image holding the speed values for front propagation Definition at line 148 of file itkSegmentationLevelSetFunction.h. |
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Definition at line 317 of file itkLevelSetFunction.h. |
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A casting functor to convert between vector types. Definition at line 155 of file itkSegmentationLevelSetFunction.h. |
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Definition at line 176 of file itkSegmentationLevelSetFunction.h. |
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Constants used in the time step calculation. Definition at line 305 of file itkLevelSetFunction.h. |
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Stride length along the y-dimension. Definition at line 315 of file itkLevelSetFunction.h. |
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Zero vector constant. Definition at line 324 of file itkLevelSetFunction.h. |
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Definition at line 280 of file itkLevelSetFunction.h. |
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Definition at line 266 of file itkLevelSetFunction.h. |
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Definition at line 197 of file itkLevelSetFunction.h. |
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Slices for the ND neighborhood. Definition at line 309 of file itkLevelSetFunction.h. |
1.4.2 written by Dimitri van Heesch,
© 1997-2000