itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField > Class Template Reference
[Finite Difference Functions]

#include <itkLevelSetMotionRegistrationFunction.h>

Inheritance diagram for itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >:

[legend]Collaboration diagram for itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >:

[legend]List of all members.

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Detailed Description

template<class TFixedImage, class TMovingImage, class TDeformationField>
class itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >

This class encapsulate the PDE which drives the demons registration algorithm. It is used by LevelSetMotionRegistrationFilter to compute the output deformation field which will map a moving image onto a a fixed image.

Non-integer moving image values are obtained by using interpolation. The default interpolator is of type LinearInterpolateImageFunction. The user may set other interpolators via method SetMovingImageInterpolator. Note that the input interpolator must derive from baseclass InterpolateImageFunction.

This class is templated over the fixed image type, moving image type, and the deformation field type.

Warning:

This filter assumes that the fixed image type, moving image type and deformation field type all have the same number of dimensions.

See also:

LevelSetMotionRegistrationFilter

Definition at line 54 of file itkLevelSetMotionRegistrationFunction.h.

Public Types
typedef SmartPointer< const Self >	ConstPointer
typedef double	CoordRepType
typedef CovariantVector< double, itkGetStaticConstMacro(ImageDimension)	CovariantVectorType )
typedef ZeroFluxNeumannBoundaryCondition< ImageType >	DefaultBoundaryConditionType
typedef LinearInterpolateImageFunction< MovingImageType, CoordRepType >	DefaultInterpolatorType
typedef Superclass::DeformationFieldType	DeformationFieldType
typedef Superclass::DeformationFieldTypePointer	DeformationFieldTypePointer
typedef Superclass::FixedImagePointer	FixedImagePointer
typedef Superclass::FixedImageType	FixedImageType
typedef Superclass::FloatOffsetType	FloatOffsetType
typedef TDeformationField	ImageType
typedef FixedImageType::IndexType	IndexType
typedef InterpolatorType::Pointer	InterpolatorPointer
typedef InterpolateImageFunction< MovingImageType, CoordRepType >	InterpolatorType
typedef Superclass::MovingImagePointer	MovingImagePointer
typedef MovingImageSmoothingFilterType::Pointer	MovingImageSmoothingFilterPointer
typedef SmoothingRecursiveGaussianImageFilter< MovingImageType >	MovingImageSmoothingFilterType
typedef Superclass::MovingImageType	MovingImageType
typedef MovingImageType::SpacingType	MovingSpacingType
typedef Superclass::NeighborhoodType	NeighborhoodType
typedef double	PixelRealType
typedef Superclass::PixelType	PixelType
typedef SmartPointer< Self >	Pointer
typedef InterpolatorType::PointType	PointType
typedef Superclass::RadiusType	RadiusType
typedef LevelSetMotionRegistrationFunction	Self
typedef FixedImageType::SizeType	SizeType
typedef FixedImageType::SpacingType	SpacingType
typedef PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >	Superclass
typedef Superclass::TimeStepType	TimeStepType
Public Member Functions
Set Get the parameter alpha Alpha is added to the calculated *gradient magnitude prior to normalizing the gradient to protect *against numerical instability as the gradient magnitude *approaches zero This should be set as a small fraction of the *intensity dynamic for instance Default is the *	absolute (not percentage) value of 0.1.*/virtual void SetAlpha(double)
virtual TimeStepType	ComputeGlobalTimeStep (void *GlobalData) const
virtual PixelType	ComputeUpdate (const NeighborhoodType &neighborhood, void *globalData, const FloatOffsetType &offset=FloatOffsetType(0.0))
virtual Pointer	CreateAnother () const
virtual void	Delete ()
virtual double	GetAlpha () const
DeformationFieldTypePointer	GetDeformationField (void)
double	GetEnergy () const
const FixedImageType *	GetFixedImage (void) const
Return a pointer to a global data structure that is passed to *this object from the solver at each calculation *virtual void *	GetGlobalDataPointer () const
virtual double	GetGradientMagnitudeThreshold () const
virtual double	GetGradientSmoothingStandardDeviations () const
double	GetGradientStep () const
virtual double	GetIntensityDifferenceThreshold () const
virtual double	GetMetric () const
const MovingImageType *	GetMovingImage (void) const
InterpolatorType *	GetMovingImageInterpolator (void)
virtual const char *	GetNameOfClass () const
bool	GetNormalizeGradient () const
const RadiusType &	GetRadius () const
virtual int	GetReferenceCount () const
virtual double	GetRMSChange () const
virtual void	InitializeIteration ()
	itkStaticConstMacro (ImageDimension, unsigned int, ImageType::ImageDimension)
	itkStaticConstMacro (ImageDimension, unsigned int, Superclass::ImageDimension)
void	Print (std::ostream &os, Indent indent=0) const
virtual void	Register () const
virtual void	ReleaseGlobalDataPointer (void *GlobalData) const
void	SetDeformationField (DeformationFieldTypePointer ptr)
void	SetEnergy (double e)
void	SetFixedImage (const FixedImageType *ptr)
Set Get the threshold below which the gradient magnitude is *considered the zero vector Default is e *virtual void	SetGradientMagnitudeThreshold (double)
Set Get the standard deviation used for smoothing the moving *image prior to calculating gradients *virtual void	SetGradientSmoothingStandardDeviations (double)
void	SetGradientStep (double e)
void	SetMovingImage (const MovingImageType *ptr)
void	SetMovingImageInterpolator (InterpolatorType *ptr)
void	SetNormalizeGradient (bool e)
void	SetRadius (const RadiusType &r)
virtual void	SetReferenceCount (int)
Set the ScaleCoefficients for the difference *operators The defaults a These can be set to take the image *spacing into account *void	SetScaleCoefficients (PixelRealType vals[ImageDimension])
virtual void	UnRegister () const
Set Get the threshold below which the absolute difference of *intensity yields a match When the intensities match between a *moving and fixed image the update	vector (for that *iteration) will be the zero vector.Default is 0.001.*/virtual void SetIntensityDifferenceThreshold(double)
Static Public Member Functions
static void	BreakOnError ()
static Pointer	New ()
Public Attributes
Set Get the threshold below which the absolute difference of *intensity yields a match When the intensities match between a *moving and fixed image	pixel
Set Get the parameter alpha Alpha is added to the calculated *gradient magnitude prior to normalizing the gradient to protect *against numerical instability as the gradient magnitude *approaches zero This should be set as a small fraction of the *intensity dynamic	range
Vector types *typedef Vector< double, itkGetStaticConstMacro(ImageDimension)	VectorType )
Protected Types
typedef ConstNeighborhoodIterator< FixedImageType >	FixedImageNeighborhoodIteratorType
Protected Member Functions
	FiniteDifferenceFunction ()
	LevelSetMotionRegistrationFunction ()
void	PrintSelf (std::ostream &os, Indent indent) const
virtual void	PrintTrailer (std::ostream &os, Indent indent) const
	~LevelSetMotionRegistrationFunction ()
Protected Attributes
DeformationFieldTypePointer	m_DeformationField
double	m_Energy
FixedImagePointer	m_FixedImage
double	m_GradientStep
MovingImagePointer	m_MovingImage
bool	m_NormalizeGradient
RadiusType	m_Radius
int	m_ReferenceCount
SimpleFastMutexLock	m_ReferenceCountLock
PixelRealType	m_ScaleCoefficients [ImageDimension]
Methods invoked by virtual Print() to print information about the object *including superclasses.Typically not called by the user(use Print()*instead) but used in the hierarchical print process to combine the *output of several classes.*/virtual void PrintSelf(std voi	PrintHeader )(std::ostream &os, Indent indent) const
Classes
struct	GlobalDataStruct

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Member Typedef Documentation

template<class TFixedImage, class TMovingImage, class TDeformationField> typedef SmartPointer<const Self> itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::ConstPointer

Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >. Definition at line 67 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> typedef double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::CoordRepType

Interpolator type. Definition at line 105 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> typedef CovariantVector<double,itkGetStaticConstMacro(ImageDimension) itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::CovariantVectorType)

Definition at line 117 of file itkLevelSetMotionRegistrationFunction.h.

typedef ZeroFluxNeumannBoundaryCondition<ImageType> itk::FiniteDifferenceFunction< TDeformationField >::DefaultBoundaryConditionType [inherited]

The default boundary condition for finite difference functions that is used unless overridden in the Evaluate() method. Definition at line 93 of file itkFiniteDifferenceFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> typedef LinearInterpolateImageFunction<MovingImageType,CoordRepType> itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::DefaultInterpolatorType

Definition at line 111 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> typedef Superclass::DeformationFieldType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::DeformationFieldType

Deformation field type. Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >. Definition at line 89 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> typedef Superclass::DeformationFieldTypePointer itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::DeformationFieldTypePointer

Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >. Definition at line 91 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> typedef ConstNeighborhoodIterator<FixedImageType> itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::FixedImageNeighborhoodIteratorType [protected]

FixedImage image neighborhood iterator type. Definition at line 211 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> typedef Superclass::FixedImagePointer itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::FixedImagePointer

Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >. Definition at line 83 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> typedef Superclass::FixedImageType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::FixedImageType

FixedImage image type. Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >. Definition at line 82 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> typedef Superclass::FloatOffsetType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::FloatOffsetType

A floating point offset from an image grid location. Used for interpolation among grid values in a neighborhood. Reimplemented from itk::FiniteDifferenceFunction< TDeformationField >. Definition at line 101 of file itkLevelSetMotionRegistrationFunction.h.

typedef TDeformationField itk::FiniteDifferenceFunction< TDeformationField >::ImageType [inherited]

Extract some parameters from the image type Definition at line 77 of file itkFiniteDifferenceFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> typedef FixedImageType::IndexType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::IndexType

Definition at line 84 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> typedef InterpolatorType::Pointer itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::InterpolatorPointer

Definition at line 108 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> typedef InterpolateImageFunction<MovingImageType,CoordRepType> itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::InterpolatorType

Definition at line 107 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> typedef Superclass::MovingImagePointer itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::MovingImagePointer

Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >. Definition at line 78 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> typedef MovingImageSmoothingFilterType::Pointer itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::MovingImageSmoothingFilterPointer

Definition at line 124 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> typedef SmoothingRecursiveGaussianImageFilter<MovingImageType> itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::MovingImageSmoothingFilterType

Moving image gradient calculator type. Definition at line 122 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> typedef Superclass::MovingImageType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::MovingImageType

MovingImage image type. Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >. Definition at line 74 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> typedef MovingImageType::SpacingType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::MovingSpacingType

Definition at line 79 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> typedef Superclass::NeighborhoodType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::NeighborhoodType

The type of data structure that is passed to this function object to evaluate at a pixel that does not lie on a data set boundary. Reimplemented from itk::FiniteDifferenceFunction< TDeformationField >. Definition at line 100 of file itkLevelSetMotionRegistrationFunction.h.

typedef double itk::FiniteDifferenceFunction< TDeformationField >::PixelRealType [inherited]

Definition at line 82 of file itkFiniteDifferenceFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> typedef Superclass::PixelType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::PixelType

Inherit some enums from the superclass. Reimplemented from itk::FiniteDifferenceFunction< TDeformationField >. Definition at line 98 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> typedef SmartPointer<Self> itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::Pointer

Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >. Definition at line 66 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> typedef InterpolatorType::PointType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::PointType

Definition at line 109 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> typedef Superclass::RadiusType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::RadiusType

Neighborhood radius type Reimplemented from itk::FiniteDifferenceFunction< TDeformationField >. Definition at line 99 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> typedef LevelSetMotionRegistrationFunction itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::Self

Standard class typedefs. Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >. Definition at line 62 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> typedef FixedImageType::SizeType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SizeType

Definition at line 85 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> typedef FixedImageType::SpacingType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SpacingType

Definition at line 86 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> typedef PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField > itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::Superclass

Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >. Definition at line 65 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> typedef Superclass::TimeStepType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::TimeStepType

Define the TimeStepType to always be double. Reimplemented from itk::FiniteDifferenceFunction< TDeformationField >. Definition at line 102 of file itkLevelSetMotionRegistrationFunction.h.

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Constructor & Destructor Documentation

template<class TFixedImage, class TMovingImage, class TDeformationField> itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::LevelSetMotionRegistrationFunction (   )  [protected]

template<class TFixedImage, class TMovingImage, class TDeformationField> itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::~LevelSetMotionRegistrationFunction (   )  [inline, protected]

Definition at line 206 of file itkLevelSetMotionRegistrationFunction.h.

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Member Function Documentation

template<class TFixedImage, class TMovingImage, class TDeformationField> Set Get the parameter alpha Alpha is added to the calculated* gradient magnitude prior to normalizing the gradient to protect* against numerical instability as the gradient magnitude* approaches zero This should be set as a small fraction of the* intensity dynamic for instance Default is the* itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::absolute (  not  percentage  )

static void itk::LightObject::BreakOnError (   )  [static, inherited]

This method is called when itkExceptionMacro executes. It allows the debugger to break on error.

template<class TFixedImage, class TMovingImage, class TDeformationField> virtual TimeStepType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::ComputeGlobalTimeStep (  void *  GlobalData  )  const [virtual]

Compute the time step that can taken for this iterations. In this context, the timestep is a function of the maximum gradients. Implements itk::FiniteDifferenceFunction< TDeformationField >.

template<class TFixedImage, class TMovingImage, class TDeformationField> virtual PixelType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::ComputeUpdate (  const NeighborhoodType &  neighborhood, void *  globalData, const FloatOffsetType &  offset = FloatOffsetType(0.0) )  [virtual]

This method is called by a finite difference solver image filter at each pixel that does not lie on a data set boundary Implements itk::FiniteDifferenceFunction< TDeformationField >.

virtual Pointer itk::LightObject::CreateAnother (   )  const [virtual, inherited]

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class. Reimplemented in itk::Object.

virtual void itk::LightObject::Delete (   )  [virtual, inherited]

Delete an itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C delete method will not work with reference counting.

itk::FiniteDifferenceFunction< TDeformationField >::FiniteDifferenceFunction (   )  [inline, protected, inherited]

Definition at line 182 of file itkFiniteDifferenceFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> virtual double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetAlpha (   )  const [virtual]

template<class TFixedImage, class TMovingImage, class TDeformationField> DeformationFieldTypePointer itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetDeformationField (  void   )  [inline, inherited]

Get the fixed image. Definition at line 87 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> double itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetEnergy (   )  const [inline, inherited]

Definition at line 92 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> const FixedImageType* itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetFixedImage (  void   )  const [inline, inherited]

Get the fixed image. Definition at line 79 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> Return a pointer to a global data structure that is passed to* this object from the solver at each calculation* virtual void* itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetGlobalDataPointer (   )  const [inline, virtual]

Returns a pointer to a global data structure that is passed to this object from the solver at each calculation. The idea is that the solver holds the state of any global values needed to calculate the time step, while the equation object performs the actual calculations. The global data should also be initialized in this method. Implements itk::FiniteDifferenceFunction< TDeformationField >. Definition at line 140 of file itkLevelSetMotionRegistrationFunction.h. References itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GlobalDataStruct::m_MaxL1Norm, itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GlobalDataStruct::m_NumberOfPixelsProcessed, itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GlobalDataStruct::m_SumOfSquaredChange, and itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GlobalDataStruct::m_SumOfSquaredDifference.

template<class TFixedImage, class TMovingImage, class TDeformationField> virtual double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetGradientMagnitudeThreshold (   )  const [virtual]

template<class TFixedImage, class TMovingImage, class TDeformationField> virtual double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetGradientSmoothingStandardDeviations (   )  const [virtual]

template<class TFixedImage, class TMovingImage, class TDeformationField> double itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetGradientStep (   )  const [inline, inherited]

Definition at line 94 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> virtual double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetIntensityDifferenceThreshold (   )  const [virtual]

template<class TFixedImage, class TMovingImage, class TDeformationField> virtual double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetMetric (   )  const [inline, virtual]

Get the metric value. The metric value is the mean square difference in intensity between the fixed image and transforming moving image computed over the the overlapping region between the two images. Definition at line 167 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> const MovingImageType* itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetMovingImage (  void   )  const [inline, inherited]

Get the moving image. Definition at line 71 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> InterpolatorType* itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetMovingImageInterpolator (  void   )  [inline]

Get the moving image interpolator. Definition at line 131 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> virtual const char* itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetNameOfClass (   )  const [virtual]

Run-time type information (and related methods). Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >.

template<class TFixedImage, class TMovingImage, class TDeformationField> bool itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetNormalizeGradient (   )  const [inline, inherited]

Definition at line 96 of file itkPDEDeformableRegistrationFunction.h.

const RadiusType& itk::FiniteDifferenceFunction< TDeformationField >::GetRadius (  void   )  const [inline, inherited]

Returns the radius of the neighborhood this FiniteDifferenceFunction needs to perform its calculations. Definition at line 142 of file itkFiniteDifferenceFunction.h.

virtual int itk::LightObject::GetReferenceCount (   )  const [inline, virtual, inherited]

Gets the reference count on this object. Definition at line 98 of file itkLightObject.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> virtual double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetRMSChange (   )  const [inline, virtual]

Get the rms change in deformation field. Definition at line 171 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> virtual void itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::InitializeIteration (   )  [virtual]

Set the object's state before each iteration. Reimplemented from itk::FiniteDifferenceFunction< TDeformationField >.

itk::FiniteDifferenceFunction< TDeformationField >::itkStaticConstMacro (  ImageDimension  , unsigned  int, ImageType::ImageDimension  )  [inherited]

Save image dimension.

template<class TFixedImage, class TMovingImage, class TDeformationField> itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::itkStaticConstMacro (  ImageDimension  , unsigned  int, Superclass::ImageDimension  )

Inherit some enums from the superclass.

template<class TFixedImage, class TMovingImage, class TDeformationField> static Pointer itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::New (   )  [static]

Method for creation through the object factory. Reimplemented from itk::LightObject.

void itk::LightObject::Print (  std::ostream &  os, Indent  indent = 0 )  const [inherited]

Cause the object to print itself out.

template<class TFixedImage, class TMovingImage, class TDeformationField> void itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::PrintSelf (  std::ostream &  os, Indent  indent )  const [protected]

Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >.

virtual void itk::LightObject::PrintTrailer (  std::ostream &  os, Indent  indent )  const [protected, virtual, inherited]

virtual void itk::LightObject::Register (   )  const [virtual, inherited]

Increase the reference count (mark as used by another object). Reimplemented in itk::Object.

template<class TFixedImage, class TMovingImage, class TDeformationField> virtual void itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::ReleaseGlobalDataPointer (  void *  GlobalData  )  const [virtual]

Release memory for global data structure. Implements itk::FiniteDifferenceFunction< TDeformationField >.

template<class TFixedImage, class TMovingImage, class TDeformationField> void itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SetDeformationField (  DeformationFieldTypePointer  ptr  )  [inline, inherited]

Set the fixed image. Definition at line 83 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> void itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SetEnergy (  double  e  )  [inline, inherited]

Definition at line 91 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> void itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SetFixedImage (  const FixedImageType *  ptr  )  [inline, inherited]

Set the fixed image. Definition at line 75 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> Set Get the threshold below which the gradient magnitude is* considered the zero vector Default is e* virtual void itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SetGradientMagnitudeThreshold (  double   )  [virtual]

template<class TFixedImage, class TMovingImage, class TDeformationField> Set Get the standard deviation used for smoothing the moving* image prior to calculating gradients* virtual void itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SetGradientSmoothingStandardDeviations (  double   )  [virtual]

template<class TFixedImage, class TMovingImage, class TDeformationField> void itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SetGradientStep (  double  e  )  [inline, inherited]

Definition at line 93 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> void itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SetMovingImage (  const MovingImageType *  ptr  )  [inline, inherited]

Set the moving image. Definition at line 67 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> void itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SetMovingImageInterpolator (  InterpolatorType *  ptr  )  [inline]

Set the moving image interpolator. Definition at line 127 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> void itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SetNormalizeGradient (  bool  e  )  [inline, inherited]

Definition at line 95 of file itkPDEDeformableRegistrationFunction.h.

void itk::FiniteDifferenceFunction< TDeformationField >::SetRadius (  const RadiusType &  r  )  [inline, inherited]

Sets the radius of the neighborhood this FiniteDifferenceFunction needs to perform its calculations. Definition at line 137 of file itkFiniteDifferenceFunction.h.

virtual void itk::LightObject::SetReferenceCount (  int   )  [virtual, inherited]

Sets the reference count on this object. This is a dangerous method, use it with care. Reimplemented in itk::Object.

Set the ScaleCoefficients for the difference* operators The defaults a These can be set to take the image* spacing into account* void itk::FiniteDifferenceFunction< TDeformationField >::SetScaleCoefficients (  PixelRealType  vals[ImageDimension]  )  [inline, inherited]

Definition at line 148 of file itkFiniteDifferenceFunction.h.

virtual void itk::LightObject::UnRegister (   )  const [virtual, inherited]

Decrease the reference count (release by another object). Reimplemented in itk::Object.

template<class TFixedImage, class TMovingImage, class TDeformationField> Set Get the threshold below which the absolute difference of* intensity yields a match When the intensities match between a* moving and fixed image the update itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::vector (  for that *  iteration  )

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Member Data Documentation

template<class TFixedImage, class TMovingImage, class TDeformationField> DeformationFieldTypePointer itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::m_DeformationField [protected, inherited]

The deformation field. Definition at line 128 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> double itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::m_Energy [mutable, protected, inherited]

Definition at line 130 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> FixedImagePointer itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::m_FixedImage [protected, inherited]

The fixed image. Definition at line 125 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> double itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::m_GradientStep [mutable, protected, inherited]

Definition at line 132 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> MovingImagePointer itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::m_MovingImage [protected, inherited]

The moving image. Definition at line 119 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> bool itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::m_NormalizeGradient [protected, inherited]

Definition at line 131 of file itkPDEDeformableRegistrationFunction.h.

RadiusType itk::FiniteDifferenceFunction< TDeformationField >::m_Radius [protected, inherited]

Definition at line 194 of file itkFiniteDifferenceFunction.h.

int itk::LightObject::m_ReferenceCount [mutable, protected, inherited]

Number of uses of this object by other objects. Definition at line 119 of file itkLightObject.h.

SimpleFastMutexLock itk::LightObject::m_ReferenceCountLock [mutable, protected, inherited]

Mutex lock to protect modification to the reference count Definition at line 122 of file itkLightObject.h.

PixelRealType itk::FiniteDifferenceFunction< TDeformationField >::m_ScaleCoefficients[ImageDimension] [protected, inherited]

Definition at line 195 of file itkFiniteDifferenceFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> Set Get the threshold below which the absolute difference of* intensity yields a match When the intensities match between a* moving and fixed image itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::pixel

Definition at line 186 of file itkLevelSetMotionRegistrationFunction.h.

Methods invoked by virtual Print () to print information about the object * including superclasses. Typically not called by the user (use Print() * instead) but used in the hierarchical print process to combine the * output of several classes. */ virtual void PrintSelf(std voi itk::LightObject::PrintHeader)(std::ostream &os, Indent indent) const [protected, inherited]

template<class TFixedImage, class TMovingImage, class TDeformationField> Set Get the parameter alpha Alpha is added to the calculated* gradient magnitude prior to normalizing the gradient to protect* against numerical instability as the gradient magnitude* approaches zero This should be set as a small fraction of the* intensity dynamic itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::range

Definition at line 178 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField> Vector types* typedef Vector<double,itkGetStaticConstMacro(ImageDimension) itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::VectorType)

Definition at line 115 of file itkLevelSetMotionRegistrationFunction.h.

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The documentation for this class was generated from the following file:

• itkLevelSetMotionRegistrationFunction.h

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