#include <itkGeodesicActiveContourShapePriorLevelSetImageFilter.h>
Inheritance diagram for itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >:


where
is image intensity and
is the derivative of Gaussian operator.
, the AdvectionScaling and CurvatureScaling both to
and the ShapePriorScaling to
.
ShapePriorSegmentationLevelSetImageFilter
GeodesicActiveContourShapePriorLevelSetFunction
SparseFieldLevelSetImageFilter
Definition at line 111 of file itkGeodesicActiveContourShapePriorLevelSetImageFilter.h.
Public Types | |
| typedef SmartPointer< const Self > | ConstPointer |
| typedef CostFunctionType::Pointer | CostFunctionPointer |
| typedef ShapePriorMAPCostFunctionBase< TFeatureImage, TOutputPixelType > | CostFunctionType |
| typedef Superclass::FeatureImageType | FeatureImageType |
| typedef GeodesicActiveContourFunctionType::Pointer | GeodesicActiveContourFunctionPointer |
| typedef GeodesicActiveContourShapePriorLevelSetFunction< OutputImageType, FeatureImageType > | GeodesicActiveContourFunctionType |
| typedef Superclass::IndexType | IndexType |
| typedef Superclass::InputImageType | InputImageType |
| typedef NodeContainerType::Pointer | NodeContainerPointer |
| typedef CostFunctionType::NodeContainerType | NodeContainerType |
| typedef CostFunctionType::NodeType | NodeType |
| typedef OptimizerType::Pointer | OptimizerPointer |
| typedef SingleValuedNonLinearOptimizer | OptimizerType |
| typedef Superclass::OutputImageType | OutputImageType |
| typedef Superclass::OutputPixelType | OutputPixelType |
| typedef CostFunctionType::ParametersType | ParametersType |
| typedef SmartPointer< Self > | Pointer |
| typedef SegmentationLevelSetFunction< OutputImageType, FeatureImageType > | SegmentationFunctionType |
| typedef GeodesicActiveContourShapePriorLevelSetImageFilter | Self |
| typedef ShapeFunctionType::Pointer | ShapeFunctionPointer |
| typedef ShapePriorSegmentationFunctionType::ShapeFunctionType | ShapeFunctionType |
| typedef ShapePriorSegmentationLevelSetFunction< OutputImageType, FeatureImageType > | ShapePriorSegmentationFunctionType |
| typedef SegmentationFunctionType::ImageType | SpeedImageType |
| typedef ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType > | Superclass |
| typedef Superclass::TimeStepType | TimeStepType |
| typedef Superclass::ValueType | ValueType |
| typedef SegmentationFunctionType::VectorImageType | VectorImageType |
Public Member Functions | |
| virtual void | AutoGenerateSpeedAdvectionOff () |
| virtual void | AutoGenerateSpeedAdvectionOn () |
| Turn On Off the flag which determines whether Positive or Negative speed *terms will cause surface expansion If set to TRUE then negative speed *terms will cause the surface to expand and positive speed terms will cause *the surface to contract If set to | FALSE (default) then positive speed terms will *cause the surface to expand and negative speed terms will cause the *surface to contract.This method can be safely used to reverse the *expansion/contraction as appropriate to a particular application or data *set.*/virtual void SetReverseExpansionDirection(bool _arg) |
| void | GenerateAdvectionImage () |
| void | GenerateSpeedImage () |
| virtual const VectorImageType * | GetAdvectionImage () const |
| ValueType | GetAdvectionScaling () const |
| virtual bool | GetAutoGenerateSpeedAdvection () |
| virtual CostFunctionType * | GetCostFunction () |
| virtual const ParametersType & | GetCurrentParameters () |
| ValueType | GetCurvatureScaling () const |
| float | GetDerivativeSigma () const |
| virtual FeatureImageType * | GetFeatureImage () |
| virtual ParametersType | GetInitialParameters () |
| Set Get the feature image to be used for speed function of the level set *equation Equivalent to calling Set | GetInput (1,..)*/virtual void SetFeatureImage(const FeatureImageType *f) |
| double | GetMaximumCurvatureTimeStep () const |
| unsigned int | GetMaximumIterations () |
| double | GetMaximumPropagationTimeStep () const |
| virtual const char * | GetNameOfClass () const |
| virtual OptimizerType * | GetOptimizer () |
| ValueType | GetPropagationScaling () const |
| virtual bool | GetReverseExpansionDirection () |
| virtual SegmentationFunctionType * | GetSegmentationFunction () |
| virtual ShapeFunctionType * | GetShapeFunction () |
| ValueType | GetShapePriorScaling () const |
| virtual ShapePriorSegmentationFunctionType * | GetShapePriorSegmentationFunction () |
| virtual const SpeedImageType * | GetSpeedImage () const |
| bool | GetUseMinimalCurvature () const |
| bool | GetUseNegativeFeatures () const |
| itkStaticConstMacro (InputImageDimension, unsigned int, TInputImage::ImageDimension) | |
| itkStaticConstMacro (ImageDimension, unsigned int, TInputImage::ImageDimension) | |
| virtual void | ReverseExpansionDirectionOff () |
| virtual void | ReverseExpansionDirectionOn () |
| void | SetAdvectionImage (VectorImageType *v) |
| Set Get the scaling of the advection field Setting the FeatureScaling parameter will override any existing value for AdvectionScaling *void | SetAdvectionScaling (ValueType v) |
| Combined scaling of the propagation and advection speed terms You should use either this or Get SetPropagationScaling and Get | SetAdvectionScaling (if appropriate).See subclasses for details on when and whether to set these parameters.*/void SetFeatureScaling(ValueType v) |
| Set Get the shape prior MAP cost function *virtual void | SetCostFunction (CostFunctionType *_arg) |
| Set Get the scaling of the curvature Use this parameter to increase the influence of curvature on the movement of the surface Higher values relative to Advection and Propagation values will give smoother surfaces *void | SetCurvatureScaling (ValueType v) |
| Set the value of sigma used to compute the edge potential map derivatives *void | SetDerivativeSigma (float value) |
| virtual void | SetInitialImage (InputImageType *f) |
| Set Get the initial parameters These are the initial parameters applied *to the ShapeFunction The user should refer to the documentation of *the particular type of ShapeSignedDistanceFunction used to determine *the meaning of the parameters *virtual void | SetInitialParameters (ParametersType _arg) |
| Set Get the maximum constraint for the curvature term factor in the time step *calculation Changing this value from the default is not recommended or *necessary but could be used to speed up the surface evolution at the risk *of creating an unstable solution *void | SetMaximumCurvatureTimeStep (double n) |
| Set Get the maximum number of iterations allowed for the solver This *prevents infinite loops if a solution bounces *void | SetMaximumIterations (unsigned int i) |
| Set Get the maximum constraint for the scalar vector term factor of the time step *calculation Changing this value from the default is not recommended or *necessary but could be used to speed up the surface evolution at the risk *of creating an unstable solution *void | SetMaximumPropagationTimeStep (double n) |
| Set Get the optimizer *virtual void | SetOptimizer (OptimizerType *_arg) |
| Set Get the scaling of the propagation speed Setting the FeatureScaling parameter overrides any previous values set for PropagationScaling *void | SetPropagationScaling (ValueType v) |
| virtual void | SetSegmentationFunction (SegmentationFunctionType *s) |
| Set Get the shape signed distance function *virtual void | SetShapeFunction (ShapeFunctionType *s) |
| Set Get the scaling of the shape prior term *void | SetShapePriorScaling (ValueType v) |
| Set the shape prior segmentation function In this should only be called *by a subclass of this object It is made public to allow itk::Command objects access *virtual void | SetShapePriorSegmentationFunction (ShapePriorSegmentationFunctionType *s) |
| void | SetSpeedImage (SpeedImageType *s) |
| *void | SetUseMinimalCurvature (bool b) |
| THIS METHOD IS DEPRECATED AND SHOULD NOT BE USED Set Get the value of the UseNegativeFeatures flag This method is *deprecated Use Set Get ReverseExpansionDirection instead *void | SetUseNegativeFeatures (bool u) |
| void | SetUseNegativeFeaturesOff () |
| THIS METHOD IS DEPRECATED AND SHOULD NOT BE USED This method reverses *the speed function effectively changing inside feature values to *outside feature values and vice versa *void | SetUseNegativeFeaturesOn () |
| void | UseMinimalCurvatureOff () |
| void | UseMinimalCurvatureOn () |
Static Public Member Functions | |
| static Pointer | New () |
Public Attributes | |
| THIS METHOD IS DEPRECATED AND SHOULD NOT BE USED This method reverses *the speed function | direction |
| Set the shape prior segmentation function In | general |
| Turn On Off automatic generation of Speed and Advection terms when Update is called If set to | Off |
Protected Member Functions | |
| void | ExtractActiveRegion (NodeContainerType *ptr) |
| void | GenerateData () |
| GeodesicActiveContourShapePriorLevelSetImageFilter (const Self &) | |
| GeodesicActiveContourShapePriorLevelSetImageFilter () | |
| virtual void | InitializeIteration () |
| void | operator= (const Self &) |
| virtual void | PrintSelf (std::ostream &os, Indent indent) const |
| ~GeodesicActiveContourShapePriorLevelSetImageFilter () | |
Protected Attributes | |
| bool | m_AutoGenerateSpeedAdvection |
| bool | m_ReverseExpansionDirection |
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Reimplemented from itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >. Definition at line 121 of file itkGeodesicActiveContourShapePriorLevelSetImageFilter.h. |
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Definition at line 110 of file itkShapePriorSegmentationLevelSetImageFilter.h. |
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The type of the MAP estimate cost function. Definition at line 109 of file itkShapePriorSegmentationLevelSetImageFilter.h. |
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Local image typedefs Reimplemented from itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >. Definition at line 126 of file itkGeodesicActiveContourShapePriorLevelSetImageFilter.h. |
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Definition at line 134 of file itkGeodesicActiveContourShapePriorLevelSetImageFilter.h. |
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Type of the segmentation function Definition at line 132 of file itkGeodesicActiveContourShapePriorLevelSetImageFilter.h. |
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Definition at line 167 of file itkSegmentationLevelSetImageFilter.h. |
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Definition at line 169 of file itkSegmentationLevelSetImageFilter.h. |
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Definition at line 116 of file itkShapePriorSegmentationLevelSetImageFilter.h. |
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Definition at line 115 of file itkShapePriorSegmentationLevelSetImageFilter.h. |
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Type of node used to represent the active region around the zero set. Definition at line 114 of file itkShapePriorSegmentationLevelSetImageFilter.h. |
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Definition at line 120 of file itkShapePriorSegmentationLevelSetImageFilter.h. |
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The type of optimizer used to compute the MAP estimate of the shape and pose parameters. Definition at line 119 of file itkShapePriorSegmentationLevelSetImageFilter.h. |
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Output image type typedefs Reimplemented from itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >. Definition at line 125 of file itkGeodesicActiveContourShapePriorLevelSetImageFilter.h. |
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Type of the output pixel. Reimplemented from itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >. Definition at line 127 of file itkGeodesicActiveContourShapePriorLevelSetImageFilter.h. |
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Definition at line 111 of file itkShapePriorSegmentationLevelSetImageFilter.h. |
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Reimplemented from itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >. Definition at line 120 of file itkGeodesicActiveContourShapePriorLevelSetImageFilter.h. |
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The generic level set function type Definition at line 176 of file itkSegmentationLevelSetImageFilter.h. |
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Standard class typedefs Reimplemented from itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >. Definition at line 117 of file itkGeodesicActiveContourShapePriorLevelSetImageFilter.h. |
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Definition at line 106 of file itkShapePriorSegmentationLevelSetImageFilter.h. |
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The shape signed distance function type. Definition at line 105 of file itkShapePriorSegmentationLevelSetImageFilter.h. |
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The level set function with shape prior type Definition at line 101 of file itkShapePriorSegmentationLevelSetImageFilter.h. |
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Reimplemented in itk::CannySegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >. Definition at line 180 of file itkSegmentationLevelSetImageFilter.h. |
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Standard class typedefs Reimplemented from itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >. Definition at line 119 of file itkGeodesicActiveContourShapePriorLevelSetImageFilter.h. |
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Definition at line 168 of file itkSegmentationLevelSetImageFilter.h. |
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Inherited typedef from the superclass. Reimplemented from itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >. Definition at line 124 of file itkGeodesicActiveContourShapePriorLevelSetImageFilter.h. |
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The type used for the advection field Reimplemented in itk::CannySegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >. Definition at line 179 of file itkSegmentationLevelSetImageFilter.h. |
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Definition at line 160 of file itkGeodesicActiveContourShapePriorLevelSetImageFilter.h. |
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Extract node of active region into a NodeContainer |
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Allocate and calculate the advection term image in the SegmentationFunction object This method is called automatically on filter execution unless AutoGenerateSpeedAdvection is set to Off. |
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Overridden from Superclass to handle the case when PropagationScaling is zero and CurvatureScaling is non-zero. Reimplemented from itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >. |
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Allocate and calculate the speed term image in the SegmentationFunction object. This method is called automatically on filter execution unless AutoGenerateSpeedAdvection is set to Off. |
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Return a pointer to the image sampled as the advection term of the segmentation algorithm. Definition at line 236 of file itkSegmentationLevelSetImageFilter.h. |
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Definition at line 348 of file itkSegmentationLevelSetImageFilter.h. |
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Get the current parameters. |
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Definition at line 365 of file itkSegmentationLevelSetImageFilter.h. |
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Get the value of sigma used to compute the edge potential map derivatives. Definition at line 156 of file itkGeodesicActiveContourShapePriorLevelSetImageFilter.h. |
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Definition at line 206 of file itkSegmentationLevelSetImageFilter.h. References itk::fem::this. |
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Definition at line 200 of file itkSegmentationLevelSetImageFilter.h. |
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Definition at line 429 of file itkSegmentationLevelSetImageFilter.h. |
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Definition at line 192 of file itkSegmentationLevelSetImageFilter.h. References itkWarningMacro. |
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Definition at line 447 of file itkSegmentationLevelSetImageFilter.h. |
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Run-time type information (and related methods). Reimplemented from itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >. |
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Definition at line 332 of file itkSegmentationLevelSetImageFilter.h. |
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Definition at line 413 of file itkSegmentationLevelSetImageFilter.h. |
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Definition at line 154 of file itkShapePriorSegmentationLevelSetImageFilter.h. |
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Definition at line 163 of file itkShapePriorSegmentationLevelSetImageFilter.h. |
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Return a pointer to the image sampled as the speed term of the segmentation algorithm. Definition at line 231 of file itkSegmentationLevelSetImageFilter.h. |
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Definition at line 381 of file itkSegmentationLevelSetImageFilter.h. |
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Definition at line 268 of file itkSegmentationLevelSetImageFilter.h. References itkWarningMacro. |
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Overrides parent implementation. MAP estimates of the shape and pose parameters is computed in this method. Reimplemented from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >. |
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Repeat definition from Superclass to satisfy Borland compiler quirks |
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Dimension of the input/level set image. |
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Method for creation through the object factory |
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Reimplemented from itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >. |
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This function is for advanced applications. Set the image sampled as the advection term of this segmentation method. In general, the advection image is generated automatically by a subclass of this filter. Definition at line 226 of file itkSegmentationLevelSetImageFilter.h. |
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Definition at line 340 of file itkSegmentationLevelSetImageFilter.h. |
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Definition at line 307 of file itkSegmentationLevelSetImageFilter.h. |
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Definition at line 357 of file itkSegmentationLevelSetImageFilter.h. |
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Definition at line 145 of file itkGeodesicActiveContourShapePriorLevelSetImageFilter.h. |
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Set/Get the initial level set model. Equivalent to calling SetInput(..) Definition at line 212 of file itkSegmentationLevelSetImageFilter.h. |
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Definition at line 421 of file itkSegmentationLevelSetImageFilter.h. |
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Definition at line 187 of file itkSegmentationLevelSetImageFilter.h. References itkWarningMacro. |
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Definition at line 439 of file itkSegmentationLevelSetImageFilter.h. |
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Definition at line 324 of file itkSegmentationLevelSetImageFilter.h. |
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Set the segmentation function. In general, this should only be called by a subclass of this object. It is made public to allow itk::Command objects access. The method is inline to avoid a problem with the gcc 2.95 compiler matching the declaration with the definition. Definition at line 401 of file itkSegmentationLevelSetImageFilter.h. |
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Definition at line 146 of file itkShapePriorSegmentationLevelSetImageFilter.h. |
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This function is for advanced applications. Set the image sampled as the speed term of this segmentation method. In general, the speed image is generated automatically by a subclass of this filter. Definition at line 220 of file itkSegmentationLevelSetImageFilter.h. |
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Definition at line 373 of file itkSegmentationLevelSetImageFilter.h. |
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Definition at line 256 of file itkSegmentationLevelSetImageFilter.h. References itkWarningMacro. |
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Definition at line 247 of file itkSegmentationLevelSetImageFilter.h. References itkWarningMacro. |
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Definition at line 242 of file itkSegmentationLevelSetImageFilter.h. References itkWarningMacro. |
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Definition at line 389 of file itkSegmentationLevelSetImageFilter.h. |
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Definition at line 385 of file itkSegmentationLevelSetImageFilter.h. |
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Definition at line 240 of file itkSegmentationLevelSetImageFilter.h. |
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Definition at line 160 of file itkShapePriorSegmentationLevelSetImageFilter.h. |
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Flag to indicate whether Speed and Advection images are automatically generated when running the filter. Otherwise, a pointer to images must be explicitly set or GenerateSpeedImage() and/or GenerateAdvectionImage() called directly before updating the filter Definition at line 500 of file itkSegmentationLevelSetImageFilter.h. |
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Flag which sets the inward/outward direction of propagation speed. See SetReverseExpansionDirection for more information. Definition at line 494 of file itkSegmentationLevelSetImageFilter.h. |
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Definition at line 292 of file itkSegmentationLevelSetImageFilter.h. |
1.4.2 written by Dimitri van Heesch,
© 1997-2000