ITK Release 4.2¶
We are pleased to announce the release of the InsightToolkit 4.2.0! Download links can be found at:
https://itk.org/ITK/resources/software.html
This release is the second since ITK 4.0 and includes a number of bug fixes and new features.
Notable changes:
an abundance of bug fixes and compiler issues were addressed
Addition of GPU modules for Finite Difference, Smoothing, Thresholding, and Registration
Physics-Based Non-Ridged Registration
Addition of Patch-Based denosing
Infrastructure for Remote Modules
Numerous Registration V4 enhancements
And Much More!
We have also improved compiler support. Specifically, we have been compiling with the latest gcc 4.7.0. And now Visual Studio 10 works without any workarounds.
New contributors with merged patches include:
Dave Chen
Marc Bruce
Michael Jeulin-L
Ren-Hui Gong
T.R Shashwath
Thanks to our gerrit code review system its easy to contribute bug fixes and patches.
Alexandre Gouaillard (1):
COMP: the inlude file has been moved to include/
Andriy Kot (1):
ENH: A2D2 Physics-Based Non-Rigid Registration
Arnaud Gelas (10):
ENH: Improve code coverage for LevelSetsv4
ENH: Possibility to provide an image to weigh the curvature term
ENH: Review IsoDataThresholdCalculator
ENH: Review IntermodesThresholdCalculator
BUG: Luminance in RGB*Pixel was computed as a ComponentType
ENH: Move ComputeMixedArea from Curvature computation into TriangleHelper
ENH: Make it works if ImageDimension > 2
ENH: Add interface to use vnl_sparse_lu as solver for mesh parameterization
DOC: Fix warning on ITKExamples Dashboard.
DOC: Fix doxygen warning
Bill Lorensen (22):
DOC: Spelling errors in comments
DOC: Spelling errors in comments
DOC: Spelling errors in comments.
DOC: Spelling errors in comments.
DOC: Spelling errors
BUG: Stray character
DOC: Spelling erros in comments
DOC: Spelling errors
DOC: Spelling errors in comments
DOC: Spelling errors in comments.
DOC: Spelling errors in comments
DOC: Bad characters
COMP: VTK6 API change
BUG: Bad signature for test.
COMP: SizeValueType not defined
BUG: Using a pointer to data that goes out of scope
BUG: Using a pointer to data that goes out of scope
ENH: Consistent INSTALL TARGET
BUG: Remove legacy iterator code
COMP: VTK6 factory changes
BUG: Remove conflicting VTK includes
BUG: Wrong viewport for mixed rgb/non-rgb images.
Brad King (6):
COMP: Update VNL “long`` ``long” instantiations for vxl 2012-03-16
COMP: Include CheckIncludeFileCXX before using it
KWSys: Remove DateStamp
KWSys: Fix SystemTools environment memory handling (#13156)
KWSys: Remove dependencies on FundamentalType
KWSys: Remove unused environ declaration from SystemTools
Bradley Lowekamp (50):
BUG: itkTestDriver should only print usage once
ENH: Don't use pretty functions strings, as they cause bloat
PERF: Improved cache coherence of StatisticsImageFilter
PERF: eliminate false sharing, improved algorithm
BUG: Corrected parent class in Superclass and TypeMacro
BUG: Fix incorrect progress reporting, improved exception handling
PERF: Implementing optimized image copy method
COMP: Address implicit cast warnings in ImageAlgorithm::DispatchedCopy
COMP: address warnings in the ImageGrid module
BUG: Fix exporting for Nrrd library
COMP: Fixing warning in threshold module related double->short
BUG: Fix out of bounds access during PrintSelf
BUG: Addressing some warnings for implicit cast between float and interger
BUG: Fix leak in NrrdIO when file doesn't exit
ENH: adding ClearSeeds method to VectorConfidenceConnected filter
ENH: For VectorImage support, iterators must not return by reference
PERF: refactor SliceBySliceImageFilter for performance
ENH: adding VectorImage support to Gradient image filter
ENH: updating vector ImageFunctions to work with VectorImages
COMP: correcting the ObjectToObjectMetric for WrapITK
STYLE: fixes for KWStyle
COMP: remove erouneous SWIG version check
BUG: adding missing types for wrapping ResampleImageFilter
COMP: fix overflow warnings
BUG: fixing a couple unitialized variables for valgrind
BUG: add missing ImageToImage for VectorImages
COMP: Fix compilation warning about typedef shadowing
COMP: Avoid C++0x constexpr error
ENH: adding ImageSource module for WrapITK
ENH: adding PatchBasedDenoising to WrapITK
COMP: fix compilation warnings in GPU code
COMP: Rename ITKImageSource module to ITKImageSources
COMP: don't construct a object only to use static methods
COMP: fix implicit conversion warnings
COMP: Use SFINAE for pixel type in PatchDenoing methods
BUG: fix incorrect class name used in PhysicalPoint source
COMP: Fix compilation of EnableIf methods in patch denoising
COMP: pass only unique include paths to GCC_XML
COMP: add explicit exception specification for IO exceptions
BUG: Display warning when returning null pointer
COMP: Fix definition of Rigid3DTransform when LEGACY enabled
COMP: Remove the use of legacy method
COMP: fix compilation error where IndexType is undefined
STYLE: fixing style according to KWStyle
COMP: fix some conversion warnings from SimpleITK dashboard
BUG: Use the input type for the threshold value
BUG: Output image is zero when no seeds are provided
BUG: Inputs to filters should be constant
BUG: remove PatchBasedDenoising from WrapITK until fixed
COMP: WrapITK: removed Denosing, matching dim for ObjectToObject
Brian Avants (3):
ENH: gradient descent optimizer with golden section line search
BUG: scales setting in wrong place
PERF: improve speed of GetNumberOfLocalParameters
Cory Quammen (4):
BUG: Fixed template arguments in deconvolution filters
BUG: Fixed kernel index shifting to handle kernels with non-zero indices
ENH: Added parametric blind least squares deconvolution
COMP: Fixed problem with linking to system FFTW
Dave Chen (1):
BUG: Fixed show2d WrapITK command for Macs.
Gaëtan Lehmann (1):
ENH: wrap the deconvolution filters
Hans Johnson (11):
COMP: Default parameters belong at declaration
COMP: Missing this-> required for clang++
BUG: Introduce proper .md5 based testing data
COMP: Remove unnecessary clang compiler option
STYLE: Remove DEPRECATED_METADATA_ORIENTATION
COMP: Variable was conditionally unitialized
STYLE: #if 0 sections of dead code removed
STYLE: Deprecated functions respect itkLegacyMacro
STYLE: Change intiial to initial
COMP: Removing a variety of compiler warnings.
STYLE: Remove refernces to itkTestMain.h
ITK Migration V4 (1):
DOC: Modify BinaryErodeImageFilter comments.
Jim Miller (2):
COMP: there is not GPUCommonRegistration library
DOC: correct documentation of Directions
Kent Williams (5):
COMP: add cstring include for memcpy
DOC: fixed up comment about GetNumberOfComponentsPerPixel()
BUG: gdcm crashed when looking at non-dicom files.
BUG: BSplineDeformable::InsideValidRegion problem
BUG: Remove itkWarningMacro from BSplineDeformableTransform::TransformPoint
Kris Zygmunt (17):
BUG: fix GPUCommon tests
ENH: add GPU Finite Difference module
ENH: add GPU ImageFilterBase module
ENH: add GPU Smoothing module
ENH: add GPU Thresholding module
ENH: add GPU RegistrationCommon module
ENH: add GPU PDE Deformable Registration module
ENH: add GPU Anisotropic Diffusion module
BUG: BoundaryFacesCalculator returns duplicate regions sometimes
BUG: SymmetricSecondRankTensor Pre and PostMultiply return wrong type
ENH: Add Subsampling Strategies to Statistics
ENH: A2D2 Denoising
COMP: Fix Patch-based Denoising 64-bit type compile errors
COMP: Fix compile error when TR1 not available
STYLE: Patch-based Denoising KWStyle fixes
COMP: Enable an Iterator with VectorImageToImageAdaptor
COMP: Fix GPUCommon warnings and circular include error
Luis Ibanez (2):
ENH: VTK6 API change. VTK_MAJOR_VERSION has moved.
BUG: Was not Rendering when screen capture was off.
Marc Bruce (1):
ENH: Expanded TIFF IO for 32-bit floating-point tiffs.
Matthew McCormick (40):
ENH: Bump version to 4.2
COMP: Fix ImageSource MakeOutput overload error.
PERF: Improve ScalarImageToTextureFeaturesFilter pipeline setup.
COMP: Fix DivideOrZeroOut Functor not-used warning.
ENH: Add itk::Math FloatAlmostEqual and FloatDifferenceULP
COMP: PhilipsRECImageIO orientation test variable name.
BUG: Fix PolyLineParametricPath endpoint detection.
COMP: Fix bool comparison warning in itkMathTest.
COMP: Fix Clang cast-align warnings in DICOMSource.h.
COMP: Disable HeaderTests for Visual Studio 10.
PERF: Prevent HeaderTest re-building with CMake configuration.
BUG: Remove extra m_DirectionChange from Transform.
COMP: ITK-2901 arg_min is not a member of vnl_sse.
ENH: Improve precision of JointHistogramMI with compensated summation.
COMP: Add PyBuffer.h to the header test black list.
BUG: Fix baseline tests for DiffusionTensor3DReconstructionImageFilterTest.
ENH: Add CMake infrastructure for fetching Remote modules.
ENH: Add the LesionSizingToolkit as a Remote Module.
BUG: Fix wrapping of ObjectToObjectMetric.
BUG: LevelSetsv4 'Base' in class name.
STYLE: Fix alignment in ImageBase.
COMP: Fix uninitialized memory conditional in FEM tests.
COMP: Fix wrapping for dimension = 1.
DOC: Fix PipelineMonitorImageFilter class doc spelling.
COMP: Update doxygen.config for version 1.8.1.
COMP: Fix Doxygen warnings in DOMNode.
COMP: itkRegionGrow2DTest uninitialized variable.
COMP: RGBGibbsPriorFilter uninitialized variable.
COMP: GaussianInterpolateImageFunction uninitialized variable.
COMP: MaskedFFTNormalizedCorrelationImageFilter not initialized.
COMP: Fix GPU class doxygen warnings.
BUG: Improve HeaderTest regeneration.
BUG: Update the Python DicomSliceRead example.
COMP: HeaderTest configuration CMake version check.
COMP: RegionGrow2DTest unintialized value.
COMP: Fix doxygen warning in GPUFiniteDifferenceImageFilter.
COMP: Doxygen warning about FloatAlmostEqual undocumented param.
COMP: Remove WrapITK include(CPack).
DOC: Add links in the doxygen footer to the tarballs.
DOC: Make diagram for PhasedArray3DSpecialCoordinatesImage verbatim.
Michael Jeulin-L (1):
BUG: Add the const correctness to SpatialObject::GetMaximumDepth
Michael Stauffer (24):
BUG: disable computation of fixed image gradients in ANTS metric
PERF: CompositeTransform - use raw pointers for efficiency
PERF: Remove pre-warp in ImageToImageMetricv4.
BUG: Add check for sampling in ANTS metric
ENH: Metricv4 floating point compensation and summed compensation
ENH: Change ANTS metricv4 default radius
ENH: Add multi-metric registration test for ImageToImageMetrics
BUG: Avoid EXC_BAD_ACCESS access when resizing array
ENH: Add a proper Demons metric in metricv4 format.
BUG: Fix bug in CentralDiffernceImageFunction regarding boundaries
ENH: Update v4 PointSet metrics to work with image metrics
ENH: Add IndexInBounds method in ConstNeighborhoodIterator
ENH: PointSetMetric overhaul, common virtual domain, estimators
ENH: Add ObjectToObjectMultiMetricv4
COMP: Fix compilation errors from recent patch merges
COMP: Fix some compiler warnings
BUG: Implement itkObjectToObjectMetricBase::GetCurrentValue()
PERF: Optimze GetValue in MattesMutual..ImageMetricv4
COMP: Fix compiler warning in Jensen PointSet Metricv4
STYLE: Rename ObjectToObjectOptimizerBase::m_Value
COMP: Fix compiler warning in LinearInterpolateImageFunction.
COMP: JointHistorgram Metricv4 - fix warning
COMP: Fix some Doxygen warnings
PERF: Change 1st parameter of UpdateTransformParameters to const
Nick Tustison (15):
ENH: Fixing registration methods pipelining.
ENH: Adding B-spline SyN registration method.
PERF: B-spline cache thrashing. h/t Brad L.
BUG: Fix valgrind errors.
ENH: Exposing window sizes in registration methods.
COMP: Address comp. warnings (int <-> double)
COMP: Remove small warning.
ENH: Adding vars and removing couts
BUG: Iterate over virtual image (not fixed image).
ENH: Improving event reporting for registration methods.
STYLE: Remove reporters from time-varying methods.
STYLE: More unnecessary variables removal.
DOC: Adding citation for method.
BUG: Unnecessary tautology.
ENH: Adding option to specify sampling percentages per level.
Paul Novotny (3):
COMP: Build fix for non-apple big-endian
COMP: Fix Spatial Object Test Segfaults
BUG: Fix test failures due to NrrdIO on i386
Ren-Hui Gong (3):
ENH: XML DOM for ITK preview 5.
BUG: XML DOM memory leakage fix and minor revisions
BUG: XML DOM Bug-Fix and Improvements (revised 2012-06-06 5:25PM).
Sean McBride (3):
COMP: valgrind suppression for system zlib
COMP: Removed undefined use of std::complex with integer types
COMP: removed invalid use of noreturn attribute
T.R Shashwath (1):
COMP: Define feenableexcept and fedisableexcept on iOS
Vivien Delmon (1):
COMP: fix compilation errors with gcc 4.7
Xiaoxiao Liu (8):
BUG: Missing vxl header in BridgeVXL header test.
BUG: Missing raw file next to mhd file.
BUG: Fix OpenCVVideoIO warnings and testing bugs.
BUG: Fix itkVideoStream test failure.
ENH: Enable component-based packaging.
ENH: Disable system installed OpenCV and VXL warnings.
BUG: ITK-2930 Fix OpenCVBridge memory copy errors.
BUG: Fix itkOpenCVVideoIOTest test failure.