ITK Release 4.11¶
New Features
Wrapping Improvements
- Python GetArrayFromImage() and GetImageFromArray() from ITKBridgeNumPy are directly accessible from the Python itk namespace.
- The itk package loads much faster: individual modules are loaded only when required.
- Conversion of ITK images from and to NumPy array using Bridge NumPy supports RGB, RGBA, and Vector images.
- VNL vectors and VNL matrices can be converted from and to NumPy objects with respectively the new couple of functions GetArrayFromVnlVector()/GetVnlVectorFromArray() and GetArrayFromVnlMatrix()/GetVnlMatrixFromArray()
- The global timestamp is used across all ITK Python modules when built statically
- Wrap additional classes such as KernelFunctionBase
- itk_python_add_test CMake function added for Python script testing in ITK modules
New Remote Modules
- DVMeshNoise
- Perturbing mesh vertices with additive gaussian noise
- https://hdl.handle.net/10380/3567
- PerformanceBenchmarking
- Accurate benchmarking of computational performance
- https://hdl.handle.net/10380/3557
- PrincipalComponentsAnalysis
- Principal components analysis of scalar, vector, and mesh vertex data
- https://hdl.handle.net/10380/3386
- RLEImage
- Run-length encoded memory compression scheme for itk::Image
- https://hdl.handle.net/10380/3562
- MorphologicalContourInterpolation
- N-D morphological contour interpolation
- https://hdl.handle.net/10380/3563
- GenericLabelInterpolator
- A generic interpolator for multi-label images
- https://hdl.handle.net/10380/3506
- MultipleImageIterator
- Iterate over multiple images simultaneously
- https://hdl.handle.net/10380/3455
- FixedPointInverseDisplacementField
- Computes inverse displacement field
- https://hdl.handle.net/10380/3222
Core Improvements
- New ITK_TEMPLATE_EXPORT for templated classes resolves cross-binary dynamic_cast on Mac OSX
- New MersenneTwisterRandomVariateGenerator instances are initialized with different seeds
- Use compiler feature detection in CMake for C++11 features, etc.
- New CMake macro itk_module_add_library for creating libraries in ITK modules
- Improved support for ccache and distcc with CMAKE__COMPILER_LAUNCHER (CMake >=3.4 required)
- Support for .sha512 ExternalData content links
- GitHub Pages and data.kitware.com ExternalData repositories added
- GPGPU system support for C++11
- Support of new compilers: Visual Studio 15 and XCode 8.2.1 (clang-800.0.42.1)
Filtering Improvements
- HessianToObjectnessMeasure moved out of the ITKReview module
- New UnsharpMaskImageFilter for image edge enhancement
IO Improvements
- TransformFactory class has been moved to a separate module
- Spline order added to BSplineTransform identifier
- Improved NIFTI orientation support
Documentation Improvements
- Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples
Third Party Library Updates
- pygccxml updated to v1.8.0
- VNL updated to latest upstream (2016.07.06)
- SWIG updated to v3.0.11
- KWSys updated to latest upstream (2016.11.21)
- HDF5 updated to v1.8.17
- SCIFIO updated to latest upstream (2016.12.01)
- DCMTK updated to 3.6.1_20121012
- CastXML to latest upstream (2016.01.28)
Improved Code Coverage – we are at 85.44%!
- Jon Haitz-Legarreta's extensive code coverage improvements
- https://blog.kitware.com/why-should-we-spend-time-writing-tests/
Changes from v4.11rc02 to v4.11.0
Bradley Lowekamp (3):
BUG: Add itk prefix to TIFF files in binary directory.
BUG: Remove ITK_DISALLOW_COPY_AND_ASSIGN as Doxygen private
BUG: First IterationEvent is at CurrentIteration==0
Francois Budin (3):
ENH: Update SCIFIO to latest revision (2017.01.17)
ENH: Update SCIFIO to lastest commit (01.21.2017)
BUG: Alpha value created when converted image to RGBA is not always 1
Jon Haitz Legarreta (2):
BUG: Fix uninitialized variables in itkGaussianInterpolateImageFunction.
BUG: Fix RTTI Superclass name in itkLabelMapMaskImageFilter.
Matthew McCormick (2):
BUG: Fix cat/echo in ContentLinkSynchronization.sh
ENH: Add missing SHA512 content links
Richard Beare (1):
BUG: Fix precision issues with poly-line FlatStructuring element
Stephen Aylward (1):
BUG: Target file for modules moved to subdir Targets.
Changes from v4.11rc01 to v4.11rc02
Bradley Lowekamp (5):
BUG: Remove unused SimpleImageRegistrationTest baselines
ENH: Expose GetNextSeed method in MersenneTwiseter Generator
BUG: Add option for fixed seed or wall clock seed for sampling
BUG: Use metric random seed in v3 examples
BUG: Prefer setting seed at algorithm in “v4” tests.
Francois Budin (3):
ENH: Update BridgeNumPy to latest version on 2017.01.08 to address ITK-3511
BUG: Extra \$ in doxygen comment
BUG: Binary include directory added only if enabled shared
Jon Haitz Legarreta (2):
DOC: Document itkLabelOverlapMeasuresImageFilter methods.
DOC: Fix ITKImageNoise filters' doc TeX errors.
Matthew McCormick (1):
BUG: Remove invalid ImageRegistration4Test.png.sha512
Max Smolens (1):
DOC: Fix itkUnsharpMaskImageFilter documentation typos
Simon Rit (1):
BUG: ITK-based software was crasing when thread creation failed
Changes from v4.10.0 to v4.11rc01
Bill Lorensen (4):
COMP: Restore support for clang 3.0 compiler
COMP: Consistent use of ModifiedTimeType
ENH: Bump WikiExamples remote module version
ENH: Bump WikiExamples version
Bradley Lowekamp (57):
ENH: Add registered TransformIO's to exception
ENH: Use template or constant for loop stop condition
ENH: Updating SWIG version to 3.0.9
COMP: Address VS9 ambiguous std::abs call in Haung calculator
COMP: Fix undefined NumericTraits::Zero and One errors with mingw64
BUG: Fix segfault if ~CleanUpObjectFactory called multiple times
BUG: Address itkHDF5ImageIO test failures for mingw64
BUG: demonstrate dynamic_cast failure when reading transforms
BUG: Address itkHDF5ImageIO test failures for mingw64
ENH: Updating SWIG version to 3.0.10
ENH: Enable CMP0063 New behavior
COMP: Enable hidden visibility property with vxl static libraries
COMP: Enable hidden visibility property with HDF5 static libraries
COMP: Enable hidden visibility property with HDF5 static libraries
BUG: Match Add2 function to AddImageFilter documentation
ENH: Improve support for std::complex with PowImageFilter
ENH: Explicitly mark required files for dependent tests
COMP: Bypass XCode 7.3,8 internal compilation error
COMP: Address CMake configuration error with itkJPEG2000Test03 property
BUG: Correct test's REQUIRED_FILES to only the input.
ENH: move HessianToObjectnessMeasure filter out of Review
ENH: Separate TransformFactory class into separate module
DOC: Add links between similar label to rgb filters
ENH: Separate data from function calls
COMP: Fix changed Graft method
ENH: Reduce template dependencies on CalculateRotationMatrix
ENH: Add Functor Accessors to LabelMapToRGB filter
BUG: Enable VirtualDomain and FixedTransform in RegMethv4
BUG: Use BSpline Order 3 for 2D in transform factory.
ENH: Add spline order to BSplineTransform's string id
ENH: Adding initial CircleCi configuration file
COMP: Fix float to unsigned integer conversion warnings
BUG: Include installed modules in ITK_MODULES_ENABLED
COMP: Address CMake error that ITKGPUCommon is not in export
COMP: Address wrong library types with VS and shared libraries
BUG: Ensure CreateImageIO is concurrent thread safe
ENH: Mark HDF5 CMake options as internal
COMP: Add template export declaration for ParametricPath
COMP: Correct TEMPLATE_EXPLICIT definition in Path module
ENH: Factor out common code in the TransformFactoryBase registration
ENH: Add CMake variable for max transform dimension, defaults 4
ENH: Create CMake module to check for private RTTI compatibility
ENH: Improving setting of default ITK_TEMPATE_VISIBILITY_DEFAULT
COMP: Correct ifndef value to allow user defined ITK_TEMPLATE_EXPORT
BUG: Add explicit instantiate for ObjectToObjectOptimizerBase
COMP: Use add_definitions for CMake 2.8.9 compatibility
COMP: Add warning suppression for distcc warning
ENH: Explicitly instantiate the optimizer base over float
BUG: Use IsLinear to check if transform is “affine”
ENH: Remove unneeded includes of random iterator header
ENH: Improve thread-safety for Generator, and unique New sequence
ENH: Do not use global random generator
BUG: Update v3 registration metrics to use local seed
ENH: Prefer setting local seed over global in tests.
ENH: Update SWIG to latest 3.0.11 release
BUG: relax testing parameters for v3 translation registration
BUG: Restore baseline for debug registration
Caspar Goch (2):
BUG: Use printable type for RGBA pixel ostream for ITK-3501
STYLE: Remove extra space for ITK-3501
Christina Rossmanith (1):
DOC: Added more details to the class Doxygen documentation.
Davis Vigneault (2):
COMP: VCL_DEFINE_SPECIALIZATION not defined
ENH: Add remote module DVMeshNoise
Dženan Zukić (27):
BUG: Fixing CID-1355433 (IDENTICAL_BRANCHES)
ENH: Adding MultipleImageIterator as a remote module
COMP: enables TBB 4.4 back-end for VTK7's SMP
COMP: enabling position independent code flag for FFTW
ENH: adding configuration file for code reformatting tool clang-format
ENH: Updating hooks to work with Windows/TortoiseGit/KDiff3
COMP: Fixing -fPIC flag passing with Ninja build system
ENH: Adding RLEImage as a remote module
ENH: Updating uncrustify configuration to current git version
STYLE: better compliance with ITK style
STYLE: A new option in uncrustify, updating the config file accordingly
ENH: Adding MorphologicalContourInterpolation as a remote module
ENH: improving documentation
BUG: fixing buffer growing endlessly, as reported by Timothee Evain
BUG: fixing buffer growing endlessly, as reported by Timothee Evain
STYLE: default uncrustify configuration file is less aggressive
COMP: Fixing warning
COMP: VS15 compiler fix
BUG: casting -9 to unsigned produced unwanted result
BUG: Ensuring consistency between debug and release
COMP: Updating LesionSizingToolkit after some recent compile fixes
COMP: respect option METAIO_USE_NAMESPACE
ENH: updating version of AnisotropicDiffusionLBR
ENH: adding UnsharpMaskingImageFilter
COMP: explicitly cast to output type
BUG: double call to update would cause empty output image
ENH: Updating RLEImage remote module. Change-log:
Eugene Prilepin (4):
ENH: Add the “ITK_USE_GPU” to ITK Config
BUG: Fix API for set/get “LaplacianImageFilter” object
ENH: Add support of images types with the 'CovariantVector' pixel type
ENH: Add python test for the 'GradientVectorFlowImageFilter' wrap
Francois Budin (52):
ENH: Adding GetArrayFromImage in python itk namespace
ENH: Adding GetImageFromArray in python itk namespace
ENH: *_WRAP_* variable per external module
BUG: ImportImageFilter not responsible of memory management
ENH: New remote module GenericLabelInterpolator
DOC: SetNumberOfOutputs had wrong comment
BUG: lazyAttributes dictionary keys could be over-ridden
BUG: lazyAttributes dictionary keys could be over-ridden
BUG: Fix recent update of HDF5 (1.8.17)
ENH: Update SCIFIO to latest version on 08/23/2016
ENH: Addition of the remote module FixedPointInverseDisplacementField
ENH: Update SCIFIO to latest version on 08/29/2016
BUG: Path to commit was relative instead of absolute
ENH: Path to SetupForDevelopment is relative, not absolute
BUG: LSMImageIO write function was not checking image dimension
BUG: LSMImageIO was not checking correctly image dimension
BUG: Missing associated test data
BUG: Missing associated test data
ENH: Bump CMakeLists.txt version to 4.10.1.
BUG: Quotes are not escaped in configured cmake file
ENH: Improving API of Graft() in itk::Image
ENH: Updating ITKGenericLabelInterpolator remote module
ENH: Update ITKIOTransformDCMTK remote module
BUG: Factory registration should depend on ITK_BUILD_SHARED
COMP: Updating DCMTK compilation for Ninja
ENH: Update version of DCMTK to 3.6.1_20121012
ENH: Update SCIFIO to latest version on 10/25/2016
BUG: Swig and PCRE do not support space in installation paths
BUG: exit() call from within piped commands was not exiting the script
BUG: Typo in folder creation command
ENH: Only display message for transform registered multiple times in debug
ENH: Image spacing must be positive
BUG: Supported extensions by PNG IO were not added in constructor.
DOC: Documentation in itkRBGAPixel and itkRGBPixel was incorrect.
ENH: Update SCIFIO to lastest (2016.12.01)
ENH: FixedPointInverseDisplacementField moved to InsightSoftwareConsortium
COMP: Remove compilation warnings
ENH: Improved support of ccache and distcc
BUG: GPUImage regression due to API change.
ENH: Update Bridge Numpy (2016.12.05)
ENH: Update VariationalRegistration to remove warnings during compilation
ENH: FindPythonLibs does not support both debug and release python libraries
ENH: Update VariationalRegistration
BUG: Missing ITK_TEMPLATE_EXPORT in forward declaration of itk::ImageBase
BUG: Missing ITK_TEMPLATE_EXPORT in itkOptimizerParametersHelper
BUG: Missing ITK_TEMPLATE_EXPORT in templated class
BUG: Remove linkage warnings on MacOS
BUG: HDF5 CMake installation directory variable had not been updated
BUG: Missing include header in AnisotropicDiffusionBLR remote module hxx files
COMP: Silencing unused variable warning in itkTimeStamp
STYLE: Improve style checking by using module ITKKWStyleOverwrite.txt
COMP: OS*Barrier functions are deprecated on MacOS 10.12
GCC-XML Upstream (1):
ENH: pygccxml v1.8.0 (reduced)
Gert Wollny (1):
BUG: Relax vnl_complex floating point comparisons for i386
Gilles Filippini (1):
BUG: Use NATIVE_HBOOL for encoding HDF5 types.
HDF Group (1):
ENH: hdf5 1.8.17-r30218 (reduced)
Hans Johnson (23):
COMP: Use cmake WriteCompilerDetectionHeader
ENH: Use itk_compiler_detection versions
COMP: Need ITK_NOEXCEPT_OR_THROW macro.
COMP: Provide consistent granular C++11 support
STYLE: Use granular ITK_COMPILER_CXX_STATIC_ASSERT
STYLE: Prefer to use consistent definitions
COMP: Improve robustness of identifying the compiler standard used
BUG: try_compile for AlignAs were always failing
STYLE: Provide a well documented macro for repeated code
STYLE: Delete functions in consistent way
COMP: GPU baseclass ivars need to be protected
COMP: Remove unnecessary circular dependancy
COMP: Add long long usage for HDF5
COMP: Add long long usage for HDF5
STYLE: Prefer static small array to dynamic array
BUG: Confusing interface for FFTW wisdom files
STYLE: Output dimension from OutputImageType
STYLE: Code review style cleanups
STYLE: Prefer to use ITK AssertOrThrow macros
ENH: Add OverrideBoundaryCondition logic
ENH: Provide mechanism for enhanced NIFTI support
BUG: Use NIFTI sform/qform conventions correctly
ENH: Remove ambiguity about sform/qform
Hastings Greer (8):
BUG: ITK-3448 Wrap itkQuadEdgeCellTraitsInfo more specifically
BUG: make itkTriangleHelper instantiable to ease wrapping
BUG: remove lsqr because of license issues ITK 1160
BUG: make itkTriangleHelper instantiable to ease wrapping
BUG: initialize X to zero in lsmr Solve
BUG: Labled Point Set Registration: test multiple labels
BUG: Fix python wrapping of Cuberille remote module
BUG: Add test demonstrating Python global timestamp issue
Jean-Christophe Fillion-Robin (5):
STYLE: UseITK: Set ImageIO exceptions using new convention. See #3393
STYLE: MeshIO: Moves virtual destructor into cpp files. See #3393
STYLE: Update MeshIO factories to use RegisterFactoryInternal. See #3393
STYLE: MeshIO: Move MeshFileWriterException into its own file. See #3393
STYLE: MeshIO: Remove unused include from headers. See #3393
Johan Andruejol (3):
ENH: Add missing itkKernelFunctionBase wrapping
ENH: Add PrincipalComponentsAnalysis remote module
COMP: Override cannot be used with inline
Jon Haitz Legarreta (216):
ENH: Improve itkFlatStructutingElement coverage.
ENH: Improve itkPathToImageFilter class coverage.
ENH: Improve itkIsolatedWatershedImageFilter coverage.
ENH: Improve itkLogSigmoidTransferFunction coverage.
STYLE: Improve itkBSplineTransform doc style.
ENH: Improve GaborKernelFunctionCoverage.
PERF: Remove duplicate itkMath include
STYLE: Move the PrintSelf method to the end
STYLE: Improve the itkScalarToRGBColormapImageFilter style.
STYLE: Delete duplicate method documentation
STYLE: Remove method documentation from implementation file
STYLE: Improve GACLevelSet classes' style
STYLE: Improve test style
ENH: Improve itkGaussianDerivativeImageFilter coverage.
ENH: Improve the itkScalarToRGBColormapImageFilter coverage
STYLE: Improve itkScalarToRGBColormap test style
ENH: Improve GACLSImageFilter classes' coverage
STYLE: Improve comment style in GACLS tests
ENH: Improve itkImportImageFilter coverage
ENH: Improve itkVideoFileReader coverage
ENH: Improve itkVideoFileWriter coverage
STYLE: Improve the itkVideoFileWriter style.
STYLE: Imrpove itkVideoFileReader style.
ENH: Improve the itkBSplineControlPointImageFunction coverage
STYLE: Improve the itkIntensityWindowingImageFilter style
STYLE: Improve the itkIntensityWindowingImageFilter test style
ENH: Improve ImageToSpatialObjectRegistrationMethod coverage
STYLE: Improve test style
ENH: Improve MaskNeighborhoodOperatorImageFilter coverage
ENH: Improve itkMeshFileWriter coverage
ENH: Improve RescaleIntensityImageFilter coverage.
ENH: Improve itkClampImageFilter coverage.
BUG: Fix ivar type casting in PrintSelf.
STYLE: Improve MRIBiasFieldCorrectionFilter style.
ENH: Improve MRIBiasFieldCorrectionFilter coverage.
ENH: Improve itkIntensityWindowingImageFilter coverage
BUG: Fix Run-time type information in CSV module classes.
ENH: Improve the itkHistogram class code coverage.
DOC: Fix documentation typo.
STYLE: Improve the ImproveRescaleIntensityImageFilter style.
PERF: Make the itkVideoFileReader ivars private
PERF: Make itkVideoFileWriter ivars private
ENH: Improve coverage for itk::OrientImageFilter.
STYLE: Improve itk::OrientImageFilter class style.
ENH: Improve itkCSVNumericObjectFileWriter coverage.
ENH: Add missing standard class typdefs.
ENH: Improve itkVoronoiSegmentationImageFilter coverage.
ENH: Improve itkVoronoiSegmentationImageFilter style.
STYLE: Improve the MalahanobisDistanceThresholdImageFunction style.
ENH: Improve coverage for itkMalahanobisDistanceThreshold.
ENH: Improve itk::MinimumMaximumImageCalculator coverage.
ENH: Improve itkMinimumMaximumImageCalculator style.
BUG: Fix type mismatch in test.
STYLE: Improve itkPolylineMaskImagefilter style.
ENH: Improve itkPolylineMaskImageFilter coverage.
ENH: Improve itkFileListVideoStyle.
ENH: Improve itkLandmarkBasedTransformInitializer coverage.
ENH: Add baseline image to itkPolylineMaskImageFilter test.
ENH: Improve coverage for itkBSplineTransformInitializer.
STYLE: Improve itkBSplineTransformInitializer doc style.
ENH: Enhance itkBSplineTransformInitializer implementation.
DOC: Fix typo in method documentation.
ENH: Improve the itkRegularStepGradientDescentOptimizerv4 style.
STYLE: Improve the itkSimpleContourExtractorImageFilter style.
ENH: Exercise the class' Get methods.
ENH: Improve coverage for itkStatisticsOpeningLabelMapFilter.
ENH: Improve style for itkThresholdLabelerImageFilter.
ENH: Improve itkThresholdLabelerImageFilter coverage.
ENH: Get internal ImageIO via a const macro.
ENH: Improve the itkSimpleContourExtractorImageFilter coverage.
STYLE: Improve the itkMetaArray class style.
ENH: Improve MetaArrayReader/Writer coverages.
ENH: Improve the itkCovarianceImageFunction style.
STYLE: Improve itkVoronoiDiagram2DGenerator style.
ENH: Improve VoronoiDiagram2DGenerator coverage.
STYLE: Improve the itkBayesianClassifierImageFilter style.
STYLE: Improve the itkMetaArrayWriter style.
ENH: Improve itkCovarianteImageFunction coverage.
COMP: Fix signed/unsigned int comparison warning.
DOC: Improve itkGrayscaleDilateImageFilter documentation.
DOC: Improve documentation for itkGrayscaleErodeImageFilter.
DOC: Improve ConfigureHistogram method documentation.
STYLE: Improve the itkMovingHistogramMorphologyImagefilter style.
BUG: Fix Superclass name in RTTI.
STYLE: Improve itkGaussianInterpolateImageFunction style.
ENH: Improve coverage for itkGaussianInterpolateImageFunction.
ENH: Improve itkBayesianClassifierImageFilter coverage.
ENH: Add itkBSplineControlPointImageFilter RTTI.
STYLE: Improve itkBSplinecontrolPointImageFilter style.
ENH: Improve itkBSplineControlPointImageFilter coverage.
ENH: Improve coverage for itkRegularStepGradientDescentOptimizerv4.
STYLE: Improve the class implementation file style.
STYLE: Improve the itkResampleImageFilter style.
DOC: Fix typo in GetMTime method doc.
STYLE: Remove out-of-body implementation doc
ENH: Improve itkResampleImageFilter coverage.
ENH: Improve itkAbsImageAdaptor and Filter coverage.
BUG: Fix itkLSMImageIO class' Superclass name.
ENH: Improve the itkInterpolateImagePointsFilter coverage.
ENH: Improve itkPowImageFilter coverage.
BUG: Fix ConvolutionImageFilter RTTI.
STYLE: Use initialization lists.
STYLE: Improve BinaryFunctorImageFilter style.
ENH: Improve itkMinimumImageFilter code coverage.
BUG: Fix Linux-x86_64-gcc4.1 warning on implicit conversion.
ENH: Improve MaximumImageFilter coverage.
BUG: Fix conversion to PixelType conversion.
COMP: Fix double to unsigned char conversion warning.
ENH: Improve coverage for itkNormalizeToConstantImageFilter.
BUG: Fix itkSquaredDifferenceErrorFunction RTTI.
ENH: Improve itkMeanImageFunctionCoverage.
ENH: Improve itkSquareImageFilter coverage.
STYLE: Improve the itkSquaredDifferenceErrorFunction style.
STYLE: Enhance style for itkNormalizeToConstantImageFilter.
STYLE: Improve itkMeanImageFunction style.
ENH: Remove unnecesary call to filter print.
ENH: Improve itkRegionOfInterestImageFilter coverage.
STYLE: Improve itkRegionOfInterestImageFilter style.
STYLE: Improve itkPasteImageFilter style.
STYLE: Improve itkJoinSeriesImageFilter style.
BUG: Fix itkPadLabelMapFilter RTTI Superclass.
COMP: Address std::cout.precision conversion warning.
ENH: Improve itkBayesianClassifiertImageFilter coverage.
ENH: Improve itkPadLabelMapFilter coverage.
ENH: Improve itkJoinSeriesImageFilter coverage.
ENH: Improve the itkPasteImageFilter coverage.
ENH: Improve MeanImageFilter coverage.
COMP: Address std::cout.precision conversion warning.
ENH: Improve TernaryMagnitudeImageFilter coverage.
ENH: Improve FFTConvolutionImageFilter coverage.
DOC: Fix class documentation in ternary magnitude filters.
ENH: Improve ConstrainedValueDifferenceImageFilter coverage.
ENH: Improve AndImageFilter coverage.
ENH: Add baseline test to itkTernaryMagnitudeImageFilter.
ENH: Use MD5 comparison framework in baseline test.
ENH: Improve itk::VectorRescaleIntensityImageFilter coverage.
STYLE: Improve the itkVectorRescaleIntensityImageFilter style.
ENH: Print missing ivar in filter PrintSelf method.
ENH: Improve itkComplexToImaginaryFilter coverage.
ENH: Improve itkComplexToPhaseImageFilter coverage.
ENH: Improve itkComplexToModulusImageFilter coverage.
ENH: Improve itkComplexToRealImageFilter coverage.
ENH: Improve itkVectorResampleImageFilter coverage.
ENH: Add GetTransform method.
ENH: Improve itkConstrainedValueAdditionImageFilter coverage.
ENH: Improve itkModulusImageFilter coverage.
ENH: Improve itkLog10ImageFilter coverage.
ENH: Imporve itkMagnitudeAndPhaseToComplexImageFilter coverage.
ENH: Improve itkLogImageFilter coverage.
ENH: Improve itkInvertIntensityImageFilter coverage.
STYLE: Improve itkInvertIntensityImageFilter style.
DOC: Add missing doc to itkInvertIntensityImageFilter.
STYLE: Improve itkIntensityWindowingImageFilter style.
STYLE: Use initialization lists.
ENH: Improve itkIntensityWindowingImageFilter coverage.
ENH: Improve itkNaryMaximumImageFilter coverage.
COMP: Fix std::precision type casting warning.
ENH: Improve itkPointSetToPointSetRegistrationMethod coverage.
STYLE: Improve the itkPointSetToPointSetImageRegistrationMethod style.
ENH: Remove SmartPointers being explicitly initialized to null.
STYLE: Improve the itkPointSetToImageRegistrationMethod style.
ENH: Improve itkPointSetToImageRegistration coverage.
STYLE: Change the name of the itkPointSetToImageRegistrationMethod test.
STYLE: Improve itkVectorResampleImageFilter style.
STYLE: Improve the itkAntiAliasBinaryImageFilter style.
ENH: Improve trigonometric function filters' coverage.
STYLE: Remove test names from std::out messages.
ENH: Improve Boolean Algebra ImageFilters coverage.
STYLE: Improve the EuclideanDistancePointMetric style.
ENH: Improve itkSigmoidImageFilter coverage.
STYLE: Improve itkCropImageFilter style.
ENH: Improve itkCropImageFilter coverage.
ENH: Improve RGBToLuminanceImageFilter and Adaptor coverage.
ENH: Improve itkRescaleIntensityImageFilter coverage.
ENH: Improve the itkMatrixSelectionImageFilter coverage.
ENH: Improve itkTanImageFilter and Adaptor coverage.
ENH: Increase itkSqrtImageFilter and Adaptor coverage.
ENH: Increase itkTernaryOperatorImageFilter coverage.
ENH: Increase itkSymmetricEigenAnalysisImageFilter coverage.
STYLE: Improve itkScalarImagekmeansImageFilter style.
STYLE: Conform to TEST_SET_GET_VALUE definition.
BUG: Fix uninitialized variable due to dynamic analysis defect.
BUG: Fix uninitialized variable defect reported by valgrind.
ENH: Improve the itkPointSetToPointSetRegistrationTest.
ENH: Improve the itkPointSetToImageRegistrationTest.
ENH: Increas BinaryMagnitudeImageFilter coverage.
STYLE: Remove test name from std output.
ENH: Increase MagnitudeImageFilter coverage.
BUG: Fix uninitialized variable defect reported by valgrind.
BUG: Fix Superclass name in RTTI.
STYLE: Improve itkFrustumSpatialFunction style.
STYLE: Improve the itkConicShellInteriorExteriorSpatialFunction style.
BUG: Fix Superclass template argument list.
STYLE: Improve the itkTorusInteriorExteriorSpatialFunction style.
STYLE: Improve the itkCheckerBoardImageFilter class style.
ENH: Improve the itk::LabelVotingImageFilter coverage.
ENH: Improve itkCheckerBoardImageFilter coverage.
STYLE: Improve itk::LabelVotingImageFilter style.
STYLE: Improve the itkHoughTransform2DCirclesImageFilter style.
ENH: Add test for itk::FrustumSpatialFunction class.
ENH: Improve itkConnectedThresholdImageFilter coverage.
STYLE: Improve itkConnectedThresholdImageFilter style.
BUG: Fix FrustumSpatialFunction internal precision conversion.
COMP: Fix implicit conversion warning.
STYLE: Improve itkThresholdImageFilter style.
ENH: Add test for itk::TorusInteriorExteriorSpatialFunction.
BUG: Fix Superclass template argument list.
ENH: Improve itkUnsharpMaskingImageFilter implementation.
ENH: Improve the itkUnsharpMaskingImageFilter coverage.
ENH: Fix UnsharpMaskingImageFilter test inconsistencies.
BUG: Add missing itkTypeMacro.
DOC: Document the member variables.
BUG: Fix the itkImageSource RTTI class name,
STYLE: Improve itkLabelImageGaussianInterpolateImageFunction style.
ENH: Finish itkGaussianInterpolateImageFunction PrintSelf.
STYLE: Improve itkLabelOverlapMeasurementImageFilter style.
KWSys Robot (6):
KWSys 2016-06-30 (96f06c8e)
KWSys 2016-10-23 (b630d2f5)
KWSys 2016-11-03 (37306a1c)
KWSys 2016-11-08 (2b3e2b1c)
KWSys 2016-11-09 (18c65411)
KWSys 2016-11-21 (cb55cf5a)
Maeliss Jallais (1):
BUG: Add unsigned and signed short to the wrapping of vnl_matrix
Matthew McCormick (85):
PERF: Simplify HilbertPath numberOfPathVertices computation.
BUG: CID 1355469 NNetClassifierTest4 unintended integer division.
BUG: Update Cuberille Remote for version check fix.
ENH: Bump ITK version to 4.11.0.
BUG: Fix HDF5ImageIO type information.
BUG: Fix H5File memory leak in HDF5ImageIO.
DOC: Collect Francois Budin's contributions in .mailmap
BUG: Limit WRAP_ITK_MODULES when building externally
STYLE: Improvements to ResourceProbe report output.
ENH: Add a useTabs argument to ResourceProbe::Report.
ENH: Add standard error measure to the ResourceProbe
ENH: Add itk_python_add_test function.
BUG: Remove VNL file from subtree merge.
COMP: Fix wrapping with a space in the Python include path
BUG: Fix PermuteAxesImageFilter pipeline method visibility
BUG: Initialize PermuteOrder and FlipAxes in OrientImageFilter
BUG: ResampleImageFilter honor isInside output of the transform method
COMP: Avoid recursive include of itkMath.h
COMP: Fix VXL header installation locations
BUG: ClampImageFilterTest for older GCC, InPlaceOn
DOC: Add CONTRIBUTING.md file to the top level.
COMP: Update VariationalRegistration to address Doxygen warnings
BUG: Compiler detections file installed into ITK build tree location
COMP: Do not use string(TIMESTAMP.
COMP: Remove HDF5 -std=c99 for C++ files
BUG: Do not build HDF5 static library with a shared build
ENH: Add PerformanceBenchmarking Remote Module
COMP: Remove duplicate wrappings for ResampleImageFilter
BUG: Put Python test output files in the build tree
BUG: Improve HDF5ImageIO::CloseDataSet name
COMP: Use add_python_test PythonLazyLoadingImage
COMP: Address missing override it itkFactoryTestLib.cxx
BUG: Index,Size,Offset constructors present in Python with C++11
COMP: Address missing override it itkFactoryTestLib.cxx
BUG: PerformanceBenchmarking as EXCLUDE_FROM_DEFAULT
ENH: Bump SetupForDevelopment version
BUG: Add missing ZLib deflate support to HDF5
BUG: Address memory leak, remove NumPy build dep in BridgeNumPy
COMP: Do not set ITK_LIBRARY_BUILD_TYPE in ITKTransformFactory
COMP: Do not set ITK_LIBRARY_BUILD_TYPE in ITKTransformFactory
BUG: Check when ITK_WRAP_VECTOR_COMPONENTS doesn't include ITK_WRAP_IMAGE_DIMS
BUG: RichardsonLucyDeconvolutionImageFilter with non-null input Image Origin
BUG: Fix inconsistent Twister start with Initialize(seed) and SetSeed(seed)
BUG: Do not hard code CMake scripts in HDF5
COMP: Workaround Emscripten ITKCommon test build failure
COMP: Do embed fancy HDF5 libsettings with Emscripten
COMP: Add missing H5T_patch_vlen_file declaration
ENH: Bump CastXML to 2016-10-11 master.
COMP: Workaround Emscripten ITKCommon test build failure
BUG: Swap CastXML hashes for Mac OSX and Windows
ENH: Sync ExternalData.cmake with upstream CMake 3.6.2
COMP: Fix VNL tests when cross-compiling
ENH: ExternalData multi-algorithm support
ENH: ExternalData support for data.kitware.com
BUG: Install missing H5pubconf.h
BUG: Use SpacePrecisionType in TileImageFilter
BUG: Use internal ExternalData_Add_Target
ENH: Run .sha512, .md5 simultaneous modification pre-commit check
BUG: Correct CastXML Windows binary
BUG: Support non-zero Index in LevelSetNeighborhoodExtractor
ENH: Add ArchiveTestingDataOnGirder.py
BUG: Correct AtanRegularizationHeavisideStepFunction derivative
ENH: Add Utilities/Maintenance/ContentLinkSynchronization.sh
BUG: Remove extra HessianToObjectness content links
ENH: Wrap SpatialFunction float types with ITK_WRAP_float
BUG: Bump PerformanceBenchmarking to 2016-11-04
BUG: itk_python_expression_add_test too many quotes.
ENH: Wrap VectorImage with complex real pixel types
ENH: Bump PerformanceBenchmarking to 2016-11-07
BUG: Do not assume zero Index in ReinitializeLevelSetImageFilter
ENH: Create itk_module_add_library macro
BUG: Update computeCodeCoverageLocally.sh for KWStyle addition
COMP: Install a newer version of CMake on CircleCI
ENH: Use GitHub Pages as the first ExternalData resource
ENH: Add tests to demonstrate OSX dynamic_cast failure
BUG: Use random seed with for MersenneTwisterRandomVariateGenerator.
BUG: Enable program global timestamp
BUG: Set random number seed in Mattes metric test
BUG: Notify builder that ITK_DYNAMIC_LOADING is required with wrapping
BUG: Define ITK_DYNAMIC_LOADING before ITK_WRAP_PYTHON
BUG: Set random number seed mutual information metric tests
BUG: Wrap std::vector< itk.Point >
BUG: Fix wrapping of LandmarkBasedTransformInitializer
BUG: Rename UnsharpMaskingImageFilter to UnsharpMaskImageFilter
DOC: Add Dženan Zukić to .mailmap
Max Smolens (4):
COMP: CID-1266557 StatisticsLabelMapFilter uninitialized scalar field
BUG: CID-1355438 QuadEdgeTest1 resource leaks
COMP: CID-1355472 MIRegistrationFunction unused value
COMP: Fix link errors for VNL template instantiations on Windows
Mayeul Chassagnard (7):
BUG: Test added and error fixed in HDF5ImageIO
ENH: Update add_library TO itk_module_add_library
COMP: Set Policy CMP0023 target_link_libraries for Modules/ThirdParty/VNLI...
BUG: Add ITK_TEMPLATE_EXPORT to template classes
BUG: Fix errors linked to dyn_cast merge
BUG: Restore old ITKModule_TEMPLATE_EXPORT specification for classes
BUG: dash3win7 dashboard build error unresolved external symbol
Michka Popoff (3):
ENH: Update UpdatepygccxmlFromUpstream.sh for v1.8.0
ENH: Update igenerator.py for pygccxml v1.8.0
COMP: Use pygccxml's public API for apply definitions
Pierre Barbier de Reuille (2):
COMP: Fix function naming error when using FFTWD
COMP: Fix function naming error when using FFTWD
Sean McBride (1):
COMP: Bypass HDF5 bugs under TSan
Simon Rit (2):
COMP: remove C++11 compiler warning for CUDA compilations
COMP: remove C++11 compiler warning for CUDA compilations
Somesh Kashyap (2):
BUG: Override TransformCategoryType for AzimuthElevationToCartesianTransform
BUG: -Added test case for itkAzimuthElevationToCartesianTransform
Sumedha Singla (1):
ENH: Updated the git tag for ITK-Minimal-Path-Extraction remote module
Taylor Braun-Jones (4):
COMP: Skip path length checks if ITK_SKIP_PATH_LENGTH_CHECKS is enabled
COMP: Fix truncation from double to float warning
DOC: Fix incorrect itkFactorylessNewMacro documentation
COMP: Only include the headers for required OpenCV modules
Thien Nguyen (1):
PERF: SmapsFileParser unnecessary dynamic_cast
VXL Maintainers (4):
VNL 2016-05-15 (14f97ab4)
VNL 2016-06-22 (23a93adb)
VNL 2016-06-29 (d62a2d70)
VNL 2016-07-06 (acfa62cc)
Vladimir S. FONOV (1):
COMP: Build against GCC 5.3.1
Zach Williamson (2):
ENH: Update Remote Module Tags
BUG: Fix Python Wrappings in C++11
Ziv Yaniv (1):
BUG: Metric sampling percentage accepted values outside (0.0, 1.0].
ITK Sphinx Examples Changes
Matt McCormick (6):
BUG: Use GDCM ITK module name
ENH: Rename ReadDICOMSeriesAndWrite3DImage
BUG: Add tests for ReadDICOMSeriesAndWrite3DImage
ENH: Bump ITK Superbuild version to 2016-09-20 master
ENH: Add Python version of ReadDICOMSeriesAndWrite3DImage
ENH: Add Python version of CreateAnRGBImage
Michka Popoff (5):
ENH: Use same Python interpreter as ITK for wrapping tests
BUG: Fix ResampleAnImage example (Python3)
ENH: Add Python example for ApplyAFilterOnlyToASpecifiedRegionOfAnImage
ENH: Add 7 Python examples to Core/Common
ENH: Add BoundingBoxOfAPointSet Python example
ITK Software Guide Changes
Matt McCormick (8):
DOC: Move the location for obtaining the software
DOC: Remove reference to ITKApps
ENH: Bump ITK ExternalProject version to 2016-11-02 master
DOC: Document the ITK module registry
ENH: Bump ITK ExternalProject version to v4.11rc01 master
DOC: Update CMake hyperlinks
DOC: Update minimum required CMake version to 2.8.9
DOC: Add section on static and shared libraries.