ITK Release 2.2

Introducing GDCM as DICOM reader/writer

Until version 2.0, ITK only natively supported reading DICOM image files. New in v2.0 is GDCM, short for “Grass roots DICOM”, a library dedicated library for reading, parsing and writing DICOM image data. GDCM is developed by the Creatis group at INSA Lyon, France.

GDCM supports Part 5 of the DICOM standard, relating to image files (and not the rest of the DICOM spec, such as networking, etc). The supported formats are:

• ACR-NEMA version 1 and 2

• Dicom version 3.0 (including various encodings of jpeg, RLE)

Class Reference : GDCMImageIO, GDCMSeriesFileNames
Examples : (None)

New itkVesselTubeSpatialObject with metaIO file format to support vessel representation

New itkDTITubeSpatialObject with metaIO file format to support DTI tracts representation and reading/writing of DTI data

This release covers the period August 10, 2004 through February 4, 2005

New Classes in this Release

Code/Algorithms/itkBinaryPruningImageFilter
Code/Algorithms/itkBinaryThinningImageFilter
Code/Algorithms/itkBioCell
Code/Algorithms/itkBioCellBase
Code/Algorithms/itkBioCellularAggregate
Code/Algorithms/itkBioCellularAggregateBase
Code/Algorithms/itkBioGenome
Code/Algorithms/itkEuclideanDistancePointMetr
Code/Algorithms/itkEuclideanDistancePointMetric
Code/Algorithms/itkKappaStatisticImageToImageMetr
Code/Algorithms/itkKappaStatisticImageToImageMetric
Code/Algorithms/itkOtsuMultipleThresholdsImageFilter
Code/Algorithms/itkScalarImageKmeansImageFilter
Code/Algorithms/itkSimplexMeshVolumeCalculator

Code/BasicFilters/itkComplexToImaginaryImageFilter
Code/BasicFilters/itkComplexToRealImageFilter
Code/BasicFilters/itkConstrainedValueAdditionImageFilter
Code/BasicFilters/itkConstrainedValueDifferenceImageFilter
Code/BasicFilters/itkContourDirectedMeanDistanceImageFilter
Code/BasicFilters/itkContourMeanDistanceImageFilter
Code/BasicFilters/itkDeformationFieldJacobianDeterminantFilter
Code/BasicFilters/itkGrayscaleMorphologicalClosingImageFilter
Code/BasicFilters/itkGrayscaleMorphologicalOpeningImageFilter
Code/BasicFilters/itkJoinSeriesImageFilter
Code/BasicFilters/itkMaskNegatedImageFilter
Code/BasicFilters/itkSignedDanielssonDistanceMapImageFilter
Code/BasicFilters/itkSimpleContourExtractorImageFilter
Code/BasicFilters/itkVotingBinaryHoleFillingImageFilter
Code/BasicFilters/itkVotingBinaryImageFilter
Code/BasicFilters/itkVotingBinaryIterativeHoleFillingImageFilter
Code/BasicFilters/itkWarpMeshFilter

Code/Common/itkComplexToImaginaryImageAdaptor
Code/Common/itkComplexToRealImageAdaptor
Code/Common/itkPhasedArray3DSpecialCoordinatesImage
Code/Common/itkSimpleFilterWatcher
Code/Common/itkSpecialCoordinatesImage
Code/Common/itkVectorNearestNeighborInterpolateImageFunction

Code/IO/itkArchetypeSeriesFileNames

Code/Numerics/itkPowellOptimizer

Code/SpatialObject/itkArrowSpatialObject
Code/SpatialObject/itkCylinderSpatialObject
Code/SpatialObject/itkDTITubeSpatialObject
Code/SpatialObject/itkDTITubeSpatialObjectPoint
Code/SpatialObject/itkMetaArrowConverter
Code/SpatialObject/itkMetaDTITubeConverter
Code/SpatialObject/itkMetaVesselTubeConverter
Code/SpatialObject/itkVesselTubeSpatialObject
Code/SpatialObject/itkVesselTubeSpatialObjectPoint

Code/Patented/CMakeLists.txt
Code/Patented/itkActiveShapeModelCalculator
Code/Patented/itkActiveShapeModelGradientSearchMethod
Code/Patented/itkSimpleFuzzyConnectednessImageFilterBase
Code/Patented/itkSimpleFuzzyConnectednessRGBImageFilter
Code/Patented/itkSimpleFuzzyConnectednessScalarImageFilter
Code/Patented/itkVectorFuzzyConnectednessImageFilter

New Tests in this Release

Testing/Code/Common/itkCenteredEuler3DTransformTest
Testing/Code/Common/itkPhasedArray3DSpecialCoordinatesImageTest
Testing/Code/Common/itkSizeTest

Testing/Code/BasicFilters/itkComplexToImaginaryFilterAndAdaptorTest
Testing/Code/BasicFilters/itkComplexToRealFilterAndAdaptorTest
Testing/Code/BasicFilters/itkConstrainedValueAdditionImageFilterTest
Testing/Code/BasicFilters/itkConstrainedValueDifferenceImageFilterTest
Testing/Code/BasicFilters/itkContourDirectedMeanDistanceImageFilterTest
Testing/Code/BasicFilters/itkContourMeanDistanceImageFilterTest
Testing/Code/BasicFilters/itkDeformationFieldJacobianDeterminantFilterTest
Testing/Code/BasicFilters/itkGrayscaleMorphologicalClosingImageFilterTest
Testing/Code/BasicFilters/itkGrayscaleMorphologicalOpeningImageFilterTest
Testing/Code/BasicFilters/itkJoinSeriesImageFilterTest
Testing/Code/BasicFilters/itkMaskNegatedImageFilterTest
Testing/Code/BasicFilters/itkResamplePhasedArray3DSpecialCoordinatesImageTest
Testing/Code/BasicFilters/itkSignedDanielssonDistanceMapImageFilterTest
Testing/Code/BasicFilters/itkSimpleContourExtractorImageFilterTest
Testing/Code/BasicFilters/itkVotingBinaryHoleFillingImageFilterTest
Testing/Code/BasicFilters/itkVotingBinaryImageFilterTest
Testing/Code/BasicFilters/itkVotingBinaryIterativeHoleFillingImageFilterTest
Testing/Code/BasicFilters/itkWarpMeshFilterTest

Testing/Code/IO/itkArchetypeSeriesFileNamesTest
Testing/Code/IO/itkImageFileWriterTest

Testing/Code/Algorithms/itkAlgorithmsPrintTest4
Testing/Code/Algorithms/itkAlgorithmsPrintTests
Testing/Code/Algorithms/itkAlgorithmsTests3
Testing/Code/Algorithms/itkBinaryThinningImageFilterTest
Testing/Code/Algorithms/itkBioCellTest
Testing/Code/Algorithms/itkBioCellularAggregateTest
Testing/Code/Algorithms/itkBioGenomeTest
Testing/Code/Algorithms/itkKappaStatisticImageToImageMetricTest
Testing/Code/Algorithms/itkMatchCardinalityImageToImageMetricTest
Testing/Code/Algorithms/itkOtsuMultipleThresholdsImageFilterTest
Testing/Code/Algorithms/itkScalarImageKmeansImageFilterTest
Testing/Code/Algorithms/itkSimplexMeshVolumeCalculatorTest

Testing/Code/Numerics/itkPowellOptimizerTest

Testing/Code/SpatialObject/itkArrowSpatialObjectTest
Testing/Code/SpatialObject/itkCylinderSpatialObjectTest
Testing/Code/SpatialObject/itkSpatialObjectTests2

Testing/Code/Patented/CMakeLists.txt
Testing/Code/Patented/itkActiveShapeModelCalculatorTest
Testing/Code/Patented/itkPatentedHeaderTest
Testing/Code/Patented/itkPatentedPrintTest
Testing/Code/Patented/itkPatentedTests
Testing/Code/Patented/itkSimpleFuzzyConnectednessScalarImageFilterTest
Testing/Code/Patented/itkVectorFuzzyConnectednessImageFilterTest

New Examples in this Release

Examples/DataRepresentation/Image/ImageExamples
Examples/DataRepresentation/Mesh/MeshExamples

Examples/Filtering/AntiAliasBinaryImageFilter
Examples/Filtering/BinaryMedianImageFilter
Examples/Filtering/FFTImageFilter
Examples/Filtering/FilteringExamples3
Examples/Filtering/FilteringExamples4
Examples/Filtering/MorphologicalImageEnhancement
Examples/Filtering/OtsuMultipleThresholdImageFilter
Examples/Filtering/OtsuThresholdImageFilter
Examples/Filtering/ResampleImageFilter7
Examples/Filtering/ResampleImageFilter8
Examples/Filtering/ResampleImageFilter9
Examples/Filtering/VotingBinaryHoleFillingImageFilter
Examples/Filtering/VotingBinaryIterativeHoleFillingImageFilter

Examples/IO/DicomImageReadChangeHeaderWrite
Examples/IO/DicomImageReadPrintTags
Examples/IO/DicomImageReadWrite
Examples/IO/DicomSeriesReadPrintTags
Examples/IO/DicomSeriesReadSeriesWrite
Examples/IO/DicomSliceRead.java
Examples/IO/DicomSliceRead.py
Examples/IO/DicomSliceRead.tcl

Examples/Patented/CMakeLists.txt
Examples/Patented/FuzzyConnectednessImageFilter
Examples/Patented/HybridSegmentationFuzzyVoronoi
Examples/Patented/IterativeClosestPoint1
Examples/Patented/IterativeClosestPoint2
Examples/Patented/IterativeClosestPoint3
Examples/Patented/PatentedExamples

Examples/Registration/DeformableRegistration7
Examples/Registration/DeformableRegistration8
Examples/Registration/DeformationFieldJacobian
Examples/Registration/RegistrationExamples8

Examples/Statistics/ImageHistogram4
Examples/Statistics/ScalarImageKmeansClassifier
Examples/Statistics/ScalarImageKmeansModelEstimator
Examples/Statistics/ScalarImageMarkovRandomField1

New Utilities in this Release

Utilities/gdcm/AUTHORS
Utilities/gdcm/ChangeLog
Utilities/gdcm/CMakeLists.txt
Utilities/gdcm/DEVELOPPER
Utilities/gdcm/Dicts/CMakeLists.txt
Utilities/gdcm/Dicts/DicomDir.d
Utilities/gdcm/Dicts/dicomTS.d
Utilities/gdcm/Dicts/dicomV3.d
Utilities/gdcm/Dicts/dicomVR.d
Utilities/gdcm/Dicts/README
Utilities/gdcm/gdcmConfigure.h.in
Utilities/gdcm/gdcm.spec.in
Utilities/gdcm/INSTALL
Utilities/gdcm/PACKAGER
Utilities/gdcm/README
Utilities/gdcm/README.ITK.txt
Utilities/gdcm/src/CMakeLists.txt
Utilities/gdcm/src/gdcm
Utilities/gdcm/src/gdcmBinEntry
Utilities/gdcm/src/gdcmCommon
Utilities/gdcm/src/gdcmDebug
Utilities/gdcm/src/gdcmDefaultDicts.cxx.in
Utilities/gdcm/src/gdcmDicomDir
Utilities/gdcm/src/gdcmDicomDirElement
Utilities/gdcm/src/gdcmDicomDirImage
Utilities/gdcm/src/gdcmDicomDirMeta
Utilities/gdcm/src/gdcmDicomDirObject
Utilities/gdcm/src/gdcmDicomDirPatient
Utilities/gdcm/src/gdcmDicomDirSerie
Utilities/gdcm/src/gdcmDicomDirStudy
Utilities/gdcm/src/gdcmDict
Utilities/gdcm/src/gdcmDictEntry
Utilities/gdcm/src/gdcmDictSet
Utilities/gdcm/src/gdcmDirList
Utilities/gdcm/src/gdcmDocEntry
Utilities/gdcm/src/gdcmDocEntrySet
Utilities/gdcm/src/gdcmDocument
Utilities/gdcm/src/gdcmElementSet
Utilities/gdcm/src/gdcmException
Utilities/gdcm/src/gdcmFile
Utilities/gdcm/src/gdcmGlobal
Utilities/gdcm/src/gdcmJpeg
Utilities/gdcm/src/gdcmJpeg12
Utilities/gdcm/src/gdcmJpeg16
Utilities/gdcm/src/gdcmJpeg2000
Utilities/gdcm/src/gdcmJpeg8
Utilities/gdcm/src/gdcmJPEGFragment
Utilities/gdcm/src/gdcmJPEGFragmentsInfo
Utilities/gdcm/src/gdcmRLEFrame
Utilities/gdcm/src/gdcmRLEFramesInfo
Utilities/gdcm/src/gdcmSeqEntry
Utilities/gdcm/src/gdcmSQItem
Utilities/gdcm/src/gdcmTS
Utilities/gdcm/src/gdcmUtil
Utilities/gdcm/src/gdcmValEntry
Utilities/gdcm/src/gdcmVR
Utilities/gdcm/src/jdatadst
Utilities/gdcm/src/jdatas
Utilities/itkjpeg/12/CMakeLists.txt
Utilities/itkjpeg/16/CMakeLists.txt
Utilities/itkjpeg/8/CMakeLists.txt
Utilities/itkjpeg/change.log
Utilities/itkjpeg/CMakeLists.txt
Utilities/itkjpeg/COPYRIGHT.dcmtk
Utilities/itkjpeg/filelist.d
Utilities/itkjpeg/install.d
Utilities/itkjpeg/jaricom
Utilities/itkjpeg/jcapimin
Utilities/itkjpeg/jcapistd
Utilities/itkjpeg/jcari
Utilities/itkjpeg/jccoefct
Utilities/itkjpeg/jccolor
Utilities/itkjpeg/jcdctmgr
Utilities/itkjpeg/jcdiffct
Utilities/itkjpeg/jchuff
Utilities/itkjpeg/jcinit
Utilities/itkjpeg/jclhuff
Utilities/itkjpeg/jclossls
Utilities/itkjpeg/jclossy
Utilities/itkjpeg/jcmainct
Utilities/itkjpeg/jcmarker
Utilities/itkjpeg/jcmaster
Utilities/itkjpeg/jcodec
Utilities/itkjpeg/jcomapi
Utilities/itkjpeg/jconfig.d
Utilities/itkjpeg/jconfig.h.in
Utilities/itkjpeg/jcparam
Utilities/itkjpeg/jcphuff
Utilities/itkjpeg/jcpred
Utilities/itkjpeg/jcprepct
Utilities/itkjpeg/jcsample
Utilities/itkjpeg/jcscale
Utilities/itkjpeg/jcshuff
Utilities/itkjpeg/jctrans
Utilities/itkjpeg/jdapimin
Utilities/itkjpeg/jdapistd
Utilities/itkjpeg/jdari
Utilities/itkjpeg/jdatadst
Utilities/itkjpeg/jdatasrc
Utilities/itkjpeg/jdcoefct
Utilities/itkjpeg/jdcolor
Utilities/itkjpeg/jdct
Utilities/itkjpeg/jddctmgr
Utilities/itkjpeg/jddiffct
Utilities/itkjpeg/jdhuff
Utilities/itkjpeg/jdinput
Utilities/itkjpeg/jdlhuff
Utilities/itkjpeg/jdlossls
Utilities/itkjpeg/jdlossy
Utilities/itkjpeg/jdmainct
Utilities/itkjpeg/jdmarker
Utilities/itkjpeg/jdmaster
Utilities/itkjpeg/jdmerge
Utilities/itkjpeg/jdphuff
Utilities/itkjpeg/jdpostct
Utilities/itkjpeg/jdpred
Utilities/itkjpeg/jdsample
Utilities/itkjpeg/jdscale
Utilities/itkjpeg/jdshuff
Utilities/itkjpeg/jdtrans
Utilities/itkjpeg/jerror
Utilities/itkjpeg/jfdctflt
Utilities/itkjpeg/jfdctfst
Utilities/itkjpeg/jfdctint
Utilities/itkjpeg/jidctflt
Utilities/itkjpeg/jidctfst
Utilities/itkjpeg/jidctint
Utilities/itkjpeg/jidctred
Utilities/itkjpeg/jinclude
Utilities/itkjpeg/jlossls
Utilities/itkjpeg/jlossy
Utilities/itkjpeg/jmemmgr
Utilities/itkjpeg/jmemnobs
Utilities/itkjpeg/jmemsys
Utilities/itkjpeg/jmorecfg.h.in
Utilities/itkjpeg/jpegDllConfig.h.in
Utilities/itkjpeg/jpegint
Utilities/itkjpeg/jpeglib
Utilities/itkjpeg/jquant1
Utilities/itkjpeg/jquant2
Utilities/itkjpeg/jutils
Utilities/itkjpeg/jversion
Utilities/itkjpeg/libjpeg.d
Utilities/itkjpeg/mangle_jpeg12bits
Utilities/itkjpeg/mangle_jpeg16bits
Utilities/itkjpeg/mangle_jpeg8bits
Utilities/itkjpeg/.NoDartCoverage
Utilities/itkjpeg/README
Utilities/itkjpeg/README.GDCM.txt
Utilities/itkjpeg/README.ITK.txt
Utilities/itkjpeg/structure.d
Utilities/kwsys/CommandLineArguments
Utilities/kwsys/CommandLineArguments.hxx.in
Utilities/kwsys/testCommandLineArguments
Utilities/MetaIO/metaArrow
Utilities/MetaIO/metaDTITube
Utilities/MetaIO/metaVesselTube
Utilities/NrrdIO/itk_NrrdIO_mangle
Utilities/NrrdIO/.NoDartCoverage