ITK Release 4.5¶
New Documentation
New edition of the ITK Software Guide. For the first time since version 2.4, a new edition of the ITK Software Guide is available, a book that has been a close companion to numerous medical imaging graduate students. In addition to numerous updates, the resource now has a community contribution mechanism that mirrors the contribution process for the ITK repository. Improvements are welcome to this living document. The new edition is available in PDF form and downloadable from https://itk.org/ItkSoftwareGuide.pdf .
ITK Wiki examples tarball. A buildable archive of the outstanding examples indexed at https://itk.org/Wiki/ITK/Examples is available to download, build against the current release, and learn from.
ITK Sphinx examples downloads. Examples available online at https://itk.org/ITKExamples/ are stored in Git version control but rendered in HTML, PDF, and EPUB output formats with the Sphinx documentation system. They have CTest unit tests, inline Doxygen class descriptions and links to full Doxygen class documentation, nightly generated Gitstats, an index, quick search, and a contribution mechanism that mirrors ITK or the Software Guide.
ITK repository examples links in Doxygen HTML documentation. A downloadable archive of the Doxygen generated HTML documentation is available as usual, but examples from the ITK repository Examples/ directory are also indexed in the description of every Doxygen class.
New Features
ITKv4 registrations can now be run in either 64-bit double or 32-bit float modes. Both double and float transform types are also now supported by metrics, optimizers, and IO readers/writers.
SpacingValueType – Previously ITK only supported representing physical space as type double. This patch introduces a typedef to encapsulate the concept of space precision to more clearly document the intended characteristics of the types. This is the first step toward allowing compile time selection of using single precision types for characterizing physical space (origin, spacing, direction cosines). There is an CMake configuration option, ITK_USE_FLOAT_SPACE_PRECISION, to allow building the entire toolbox in single precision mode, and currently is intended to facilitate future performance testing. NOTE: Use of ITK_USE_FLOAT_SPACE_PRECISION causes many regression test failures, and is not intended for production use at this time.
Support for “float” type as physical units type in the Registration framework, which makes possible float type displacement fields and faster, less memory intensive registrations
Many performance improvements in Registration – significant performance improvements made for ImageRegistration. See patch sets prefixed by PERF. False sharing across threads as identified and removed. Unnecessary mutex lock identified and removed. For one common case on real sized data, this resulted in a 70X speed increase.
Two new Remote modules:
MGHIO – Partial support for reading/writing image files from FreeSurfer (Not a complete implementation, but simple label maps and intensity images can be read/written).
SmoothingRecursiveYvvGaussianFilter – From Insight Journal submission: https://hdl.handle.net/10380/3425
The SCIFIO remote module has also seen nice updates.
IO module libraries will now be built as shared libraries with BUILD_SHARED_LIBS ON
MRCImageIO moved out of the Review Module
BinShrinkImageFilter added – From Insight Journal submission: https://hdl.handle.net/10380/3450
WrapITK Python wrapping now supporting GCC 4.8
JPEG format now writes out spacing in physical units
MINC ImageIO improvements:
Correct handling of missing or damaged minc file
MINCTransformAdapter class to use MINC style transformations stored in .xfm files, using native minc general_transform functions, which means that thin-plate spline non-linear transformations are accessible and calculation of inverse transformation can be done in a way consistent with minc tools.
Ability to store any linear transformation based on MatrixOffsetTransformBase<double,3,3> in minc style .xfm file (using TransformFileWriter).
OtsuThresholding classes made more consistent with other libraries
Now the output of the threshold value may be different from previous releases (bug fix)
Synchronized with “teem” library 1.11.1, providing NRRD functionalities.
FlatStructuringElement new option to use a parametric radius in Ball() method
LevelSetsv4 now has a penalty term for overlap between level sets.
Can now read Philips 4D multi-frame DICOM files
CMake variable ITK_BUILD_ALL_MODULES was replaced with ITK_BUILD_DEFAULT_MODULES (same behavior, more appropriate name).
Remote Modules were simplified by removing the CMake configuration variable Fetch_{RemoteModuleName} and only requiring Module_{RemoteModuleName}
New CTest label “RUNS_LONG” to makes it possible to exclude long running tests with “ctest -LE RUNS_LONG”
Deprecate ITK_USE_REVIEW CMake variable in favor of Module_ITKReview
Better support for system installed GDCM
Preliminary support for Visual Studio 12 (2013)
Preliminary support for OSX 10.9 - Maverick
Support for building ITK against a DCMTK 3.6.0 installed on Ubuntu using apt-get
Improved support for C++11
More consistent coding style across the toolkit
Lots* of important bug fixes, including 73 issues reported by Coverity static analysis
And more! See details in the log.
List of changes since v4.5rc03
Bradley Lowekamp (4):
BUG: Fix rounding issue with HistogramPlotter test
COMP: Remove unused method to manage warning
COMP: Prevent compile-time numeric warnings in Float Exception test
BUG: Add new baseline and relax tolerance for histogram plotter
Brian Helba (2):
BUG: Put ImageIOBase helper function in anonymous namespace
BUG: Remove an invalid test case that will always fail
Constantine Zakkaroff (1):
DOC: ITK Software Guide Reference Label Fix
Kent Williams (1):
COMP: Remove outdated conditionals/pragmas
Matthew McCormick (9):
COMP: Fix BSplineDeformableTransformTest for GCC4.8.2.
COMP: Disable -Warray-bounds for GCC 4.7, 4.8.
COMP: Fix HDF5 add_custom_command TARGET does not exist warnings.
COMP: ImageRegistrationHistogramPlotter HistogramWriter visibility.
BUG: Do not clobber Git origin pushurl.
COMP: Fix signed/unsigned comparison in itkBinShrinkImageFilterTest1.
BUG: Fix BinShrinkImageFilter 32-bit failures with rounding.
BUG: Make RealTimeClock on Windows report consistent time.
ENH: Mark ImageRegistrationHistogramPlotterTest as RUNS_LONG.
Paolo Zaffino (1):
ENH: wrap CenteredTransformInitializer 2D images
Xiaoxiao Liu (2):
BUG: itkVTKTetrahedraMeshReader fails on a win64 build.
BUG: SCIFIO auto image factory registration.
List of changes since v4.5rc02
Bill Lorensen (1):
ENH: Restore/convert/repair ImageRegistrationHistogramPlotter
Bradley Lowekamp (5):
DOC: Fixing BinShrink image caption
BUG: Fix up-casting causing inf loop
BUG: remove HDF5 configuration option propagated to the top
BUG: initialize member variables in LabelVoting filter
BUG: Add missing cmake file for MRCIO and wrapITK
Jean-Christophe Fillion-Robin (1):
COMP: Ensure FindDCMTK.cmake provided by ITK is used (build tree case)
Matthew McCormick (2):
ENH: Wrap additional dimensions for TileImageFilter.
BUG: LeafTreeIterator does not produce correct output.
Xiaoxiao Liu (1):
BUG: Fix remote image IO module registration.
List of changes since v4.5rc01
Bill Lorensen (1):
COMP: Dead code
Bradley Lowekamp (6):
COMP: Fix C++11 conversion warning.
STYLE: Use double type in array initializer list for spacing
COMP: No Vector pixel type for BinShrink
BUG: Use standard baseline and compare for validation
BUG: Remove initially available ITK_WRAP_JAVA cmake option
COMP: Use SimpleNew macro to avoid Clone method
Brian Helba (1):
DOC: Clarified NormalizedCorrelationImageToImageMetric value
Hans Johnson (1):
BUG: SpacePrecision typedef's incorrect.
Julien Michel (1):
BUG: Using static const variable causes ld error when using dynamic libraries
KWSys Robot (1):
KWSys 2013-11-21 (1010d0e3)
Matt Leotta (1):
COMP: Fix improper included header in vcl_memory_tr1.h
Matthew McCormick (1):
BUG: Update VXL update README location.
List of changes since v4.4.0
Ali Ghayoor (5):
ENH: transform reader/writer filters are templated on output precision type
BUG: Fix memory leak error in itkHDF5TransformIO
DOC: Migration guide is updated for multi precision of ITK
BUG: TvirtualImage mismatch in registrationV4 and metric object
STYLE: check dynamic cast validation in ITKv4 Registration
Andinet Enquobahrie (1):
BUG: UseSeriesDetails variable not correctly set
Arnaud Gelas (24):
ENH: Converting itk::Point, Size, Index, Vector, Matrix to corresponding OpenCV data structure
BUG: Check that region for thread is not empty
COMP: use concept checking instead of runtime checking
BUG: Fix failure in InteractivePause test
ENH: updating level sets sparse layer visualization
ENH: Upgrade doxygen config file
BUG: fix KWStyle errors in itkVTKVisualize* files
BUG: Fix visualization of 3D level-sets
ENH: Add Concept checking for 2D Visualization
ENH: Use partial template specialization for iso value vis
BUG: Check that region for thread is not empty
BUG: Fix failure in InteractivePause test
BUG: fix include to the corresponding hxx
COMP: fix compilation error with Set/Get LevelSetDataPointerVector
ENH: Rename LevelSetDataPointerVector -> LevelSetDomainRegionVector
PERF: fix cppcheck issues in itk::ImageRegion
STYLE: fix cppcheck style warning
STYLE: fix cppcheck errors
PERF: fix cppcheck perf warning
PERF: cppcheck copy constructor
PERF: fix cppcheck issues in itk::ImageRegion
PERF: cppcheck performance issue
COMP: fix cppcheck errors member not initialized in constructor
STYLE: fix cppcheck style warning
Bill Lorensen (27):
ENH: Reduce test times for Debug builds
COMP: Bad CMake warning
COMP: Resource leaks
COMP: Resource leaks
COMP: Uninitialized scalar variable
COMP: Unbounded source buffer
COMP: Destination buffer too small
COMP: Destination buffer too small
COMP: Resource leak
COMP: Resource leak
COMP: Big parameter passed by value
COMP: Big parameter passed by value
COMP: Copy-paste error
COMP: Copy-paste error
COMP: Copy-paste error
COMP: Copy-paste error
COMP: Copy-paste error
COMP: Structurally dead code and resource leaks
COMP: Big parameter passed by value
COMP: Explicit null dereferenced
COMP: Logically dead code
COMP: Logically dead code
COMP: Logically dead code
COMP: Logically dead code
COMP: Format string vulnerability
COMP: Copy-paste error
COMP: Dead code
Brad King (5):
ENH: ExternalData: Do not re-stage staged object files
MetaIO: Removed the deprecated _CM24 CMake variables
COMP: Cleanup CMP0022 warnings in GDCM module
COMP: Cleanup CMP0022 warnings in GDCM module static build
BUG: Do not convert to make-escaped path for internal APIs
Bradley Lowekamp (55):
COMP: Fix ambiguous specialization of GDCM Element
ENH: Use Tiff version dependent field type enable LSM
BUG: disable aligned attribute for GCC 4.1
BUG: Prevent signed integer overflow in vnl urand_
BUG: enable return value optimzation for VS debug mode
BUG: increase the image tolerance for deformable test 5
BUG: fix gradient recusive gaussian in VS debug
BUG: in NthElementAdaptor pass by reference to modify argument
BUG: disable aligned attribute for GCC 4.1
BUG: Prevent signed integer overflow in vnl urand_
BUG: enable return value optimzation for VS debug mode
BUG: fix gradient recusive gaussian in VS debug
BUG: in NthElementAdaptor pass by reference to modify argument
ENH: Add option ENABLED_SHARED to itk_module for shared libraries
ENH: Enabling shared IO modules on windows
DOC: adding Examples directory to ITK Doxygen
DOC: remove explicit doxygen example commands now automatically added
BUG: add installation of Export headers
BUG: Remove ENABLED_SHARED option for IOSpatialObjects module
BUG: Fix linking of factory register method on static windows
STYLE: Fix some style errors reported in continuous test
BUG: Remove Spurious testing file
COMP: Use relative path for generate output header parameter
BUG: Enable slice-by-slice streaming for ShrinkImageFilter
STYLE: Fix ShrinkImageStreamingTest style
PERF: Flip filter use increment in scanline direction
PERF: Additional FlipImageFilter performance by using input iterator
PERF: Move test to IntegratedTest directory
STYLE: fix typedef alignment
ENH: Move validation to VerifyInputInformation
ENH: Improve internal streaming for SliceBySliceImageFilter
ENH: Enable a VectorImage to be used as displacement field
BUG: Don't print null bias field
ENH: Define print of null smart pointers
BUG: Fix uninitialized m_Spacing in SignedMaurerDistance
BUG: Fix uninitialized m_Spacing in SignedMaurerDistance
BUG: Don't print null bias field
BUG: Verify ConfidenceConnected Seeds
BUG: Verify seeds in VectorConfidenceConnected
ENH: Check and use C++11 typetraits first
COMP: Use memcpy for raw memory copy
BUG: Use string constructor which calculates str length
BUG: fix out of bounds access of array
ENH: Move private constant and method to private header
ENH: Adding BinShrinkImageFilter.
COMP: Fix warnings and missing include
BUG: Fix Valrgrind detected delete mismatch
ENH: improve coverage for SetShrinkFactor methods
STYLE: running uncrustify and manual fixups
ENH: Moving MRCImageIO out of review
COMP: Fix gcc_xml segfault due to structure alignment
ENH: adding wrapping support for BinShrink
BUG: Add missing export specifiers for MRC module
ENH: Move MRC wrapping out of review
COMP: VS12 missing header in review
Brian Helba (45):
DOC: Fix instances of class documentation outside itk namespace
PERF: Discourage DomainThreader from spawning superfluous threads
DOC: Cleanup docs for ThreadedDomainPartitioner and subclasses
ENH: Implement ThreadedImageRegionPartitioner using ImageRegionSplitter
STYLE: Unify style of “operator`` ``delete[]”
STYLE: Remove superfluous return statements at the end of void functions
STYLE: Fix miscellaneous KWStyle errors
ENH: Remove superfluous IMMEDIATE option from CMake CONFIGURE_FILE
STYLE: Replace Unicode in ITK source with ASCII homoglyphs
ENH: Use MINC API to free memory allocated by MINC
PERF: Allow delete of NULL pointers
PERF: Refactor some deletion code
ENH: Refactor KWStyle testing
COMP: Make find_package usage compatible with < CMake-2.8.8
BUG: Prevent CMake cache variable from endlessly accumulating values
ENH: Rename Utilities/KWStyle/ITK.kws.xml.in to ITK.kws.xml
DOC: Update Migration guide schema URL
ENH: Rename ALL_MODULES to DEFAULT_MODULES
STYLE: Fix class indentation
BUG: Make KWStyleTest output in a uniform and concise format
BUG: Update SmoothingRecursiveYvvGaussianFilter to fix CMake warning
STYLE: Fix some indents in FixedArray::ReverseIterator declaration
DOC: Fix issues in Transform and TransformBaseTemplate
BUG: Make ImageIOBase::SetDirection accept const reference parameter
BUG: Fix uninitialized variables in itkOpenCVBasicTypeBridgeTest
DOC: Prevent concept checking comments from being parsed by Doxygen
BUG: Prevent DCMTK from trying to build unnecessary components
DOC: Update documentation graph font to avoid warnings
DOC: Move an included STL file out of the itk namespace
COMP: Fix warning C4789 from VisualStudio 11
ENH: Add explicit KWStyle testing for Examples directory
STYLE: Replace indentation tabs with spaces
STYLE: Fix KWStyle issues in Examples: whitespace
STYLE: Fix KWStyle issues in Examples: typedef alignment
STYLE: Fix KWStyle issues in Examples: manual fixes
BUG: Use KWStyle's GCC-style output for pre-commit style check
STYLE: Remove trailing whitespace
BUG: Make SCIFIO module non-default
BUG: Fix memory leaks in MINCImageIO
BUG: Fix ostream format modification warnings
BUG: Fix uninitialized members of MINCImageIO
DOC: Move Vector documentation from definition to declaration
BUG: Resource leak
ENH: Update CMake deprecated commands with new equivalents
STYLE: Fix initialization list in BSplineBaseTransform constructor
C Cagatay Bilgin (1):
DOC: Modify ShapeLabelObject comments.
Christina Rossmanith (1):
BUG: enable itkLabelGeometryImageFilter to be used in loops
Constantine Zakkaroff (1):
DOC: Correct DICOM Tag List Formatting
Cory Quammen (2):
BUG: Enabled negative background values
BUG: Fixed memory overusage in LandweberDeconvolutionImageFilter
Csaba Pinter (1):
BUG: GDCM pixel spacing of ultrasound images.
Cyrille Faucheux (1):
BUG: Fix support for RLE-compressed & upper-left BMP.
Daniel Maleike (3):
BUG: Assert unchanged pixels only for non-PALETTE_COLOR images
BUG: Add test case for GDCMImageIO
BUG: Assert unchanged pixels only for non-PALETTE_COLOR images
Dirk Padfield (17):
BUG: LabelGeometry cropped images with non-unit spacing incorrectly
BUG: ProgressAccumulator reports incorrectly for streamed filters
BUG: LabelGeometry matrix difference tolerance
ENH: Added progress reporting to Masked FFT NCC
BUG: LabelGeometry improvements
BUG: Corrected the MaskedFFTNCC origin
BUG: Resolved Otsu/OtsuMultiple Discrepancy
ENH: Deprecated SetProgress and removed Modified call
ENH: Deprecated SetProgress and removed Modified call
BUG: ConstPointer assigned to non-const raw pointer
ENH: Otsu code replaced with OtsuMultiple call
BUG: ConstPointer assigned to non-const raw pointer
ENH: Added valley emphasis algorithm to OtsuMultipleThresholds
BUG: ReachedTargetPoints not set for OneTarget
ENH: Remove duplicate code in BinaryBall and BinaryCross
ENH: Added radiusIsParametric mode to FlatStructuringElement
ENH: Improved writing speed for TIFF images
Ethan Brodsky (1):
BUG: fixedOrigin corrected in DeformableRegistration examples (ITK-3218)
Gordon Kindlmann (1):
BUG: airOneLinify() infinite loop, synch w/ Teem for its 1.11.1 release
Hans Johnson (36):
ENH: Add Remote Module for r/w of MGH files
ENH: Provide instructions for linking to issues
ENH: Feature to allow human readable object names
BUG: Preserve backwards compatibility with types
PERF: Optimizer scale caching and avoid copy
ENH: Support single precision registration
STYLE: Avoid polluting the ITK namespace
STYLE: Simplify H5::Exception handeling
STYLE: Replace expected exceptions with macro
BUG: ImageSeriesWriter + GDCMImageIO loses info
BUG: ImageSeriesWriter + GDCMImageIO loses info
STYLE: ITK_EXPORT had no use
BUG: Missing ',' in array of strings
BUG: 'temp' used in exception message after delete
BUG: Code after exceptions is unreachable
BUG: Printing size of deleted variable
BUG: Function should have const signature
COMP: Remove unused variable
COMP: Simplify code, and remove compiler warning
STYLE: Use “typename” for template parameters
COMP: Unused Clone and CreateAnother warnings
STYLE: Prefer initialization to assignement.
COMP: Const char * ternary operators
BUG: Derived test class missing required logic
PERF: Remove false sharing across threads
PERF: Avoid smart pointer registration penalty
PERF: Avoid vector copy, and prefer multiplication
PERF: Reviewing code for facilitating compiler optimizations
PERF: Avoid upcasting from float to double
BUG: Match Convergence Window Precision
COMP: Remove undefined complex types
COMP: Remove undefined complex types
COMP: Invalid conversion detected by clang c++11
COMP: Non standard conversion for -std=c++11
COMP: Allow single precision space definition
COMP: Namespace change for SpacePrecisionType
Ho Cheung (6):
BUG: VS11 Debug mode assertions fixes
BUG: VS10/11 debug assertions for null pointer for std::copy
BUG: VS11 Debug mode assertions fixes
BUG: VS10/11 debug assertions for null pointer for std::copy
ENH: Improve mangling of itktiff library.
ENH: Improve mangling of itktiff library.
Irina Vidal-Migallon (3):
ENH: Remote module: GPU and CPU Smoothing recursive YVV Gaussian Filter
ENH: Remote module: GPU and CPU Smoothing recursive YVV Gaussian Filter
ENH: YVV remote module - Add EXCLUDE_FROM_ALL option to itk_module.
Jean-Christophe Fillion-Robin (10):
BUG: Disable aligned attribute to fix Apple GCC 4.2.1 seg fault
COMP: Ensure FindDCMTK module works with and without DCMTKConfig.cmake file
COMP: Make FindDCMTK more verbose
DOC: Improve FindDCMTK.cmake documentation
COMP: Ensure DCMTK libraries can be found on system without setting DCMTK_DIR
COMP: FindDCMTK - Workaround bug in packaging of DCMTK 3.6.0 on Debian.
COMP: Update ITKDCMTK_EXPORT_CODE_(BUILD|INSTALL) to support system DCMTK
COMP: FindDCMTK - Exclude -D from DCMTK_DEFINITIONS for easier re-use
COMP: FindDCMTK - Do not explicitly set DCMTK_DEFINITIONS
COMP: Associate ITKIODCMTK with DCMTK_DEFINITIONS
Jim Miller (5):
BUG: GDCMImageIO ignore image orienations from MetaDataDictionary
BUG: Two tests were writing to same filename.
BUG: GDCMImageIO ignore image orienations from MetaDataDictionary
BUG: Two tests were writing to same filename.
ENH: ResampleImageFilter ReferenceImage only needs to match dimension
Jonathan Guinet (2):
BUG: {Opening,Closing}ByReconstructionImageFilter information propagation
BUG: {Opening,Closing}ByReconstructionImageFilter information propagation
Julien Michel (1):
ENH: Adding a separate template parameter to handle transform precision
KWSys Robot (1):
KWSys 2013-07-10 (beef6819)
Kent Williams (22):
ENH: fix std::string usage
DOC: Rename DCMTKException DCMTKExceptionOrErrorReturn
ENH: fix std::string usage
BUG: Need to set 3rd dir cosine for DICOM images
ENH: Accomodate Philips 4D Multiframe DICOM files
BUG: Guard against Divide by Zero
BUG: Row/Column assignment into ImageDimensions was wrong
BUG: Guard against Divide by Zero
BUG: Row/Column assignment into ImageDimensions was wrong
ENH: Accomodate Philips 4D Multiframe DICOM files
DOC: Rename DCMTKException DCMTKExceptionOrErrorReturn
BUG: Need to set 3rd dir cosine for DICOM images
COMP: Update git tag to incorporate MGHIO origin fix
COMP: Move TransformFileWriter Specializations to CXX file.
BUG: Bug fixed in remote MGHImageIO repo, update git tag
BUG: argument check in LBFGSB too restrictive
COMP: extend test for HistogramMatchingImageFilter to more pixel types
COMP: HistogramMatchingFilterTest problem with ITKV3_COMPATIBILITY
COMP: Make sscanf format & variable match types
BUG: Fix tests that fail with Intel ICPC compiler on Linux
ENH: Avoid use of cast in ImageToImageMetricV4
BUG: DCMTKFileReader erroneously propogating exceptions
Kishore Mosaliganti (8):
ENH: Allow visualization of initial level-set
ENH: Add Set/GetNumberOfThreads for evolution
ENH: New binary mask term with test
ENH: Set/Get number of threads for Whitaker evolution class
BUG: Non-square images mesh not specified correctly
ENH: Set the scaling factor of the level-set function
ENH: Added new overlap penalty term and test
ENH: Level-set domains different from image domain
Luis Ibanez (7):
STYLE: Fixed miscelaneous style errors.
DOC: Removed Doxygen \example tags for Tests.
COMP: Fix warnings in matrix division by scalar.
COMP: Attempt to fix warning about \param.
BUG: Fixed while loop condition.
DOC: Better description of what the code is doing.
BUG: Memory leak. Reported by Coverity.
Mark Hiner (5):
BUG: Wrong classpath separator on Windows
BUG: Wrong classpath separator on Windows
ENH: Updated SCIFIO remote reference
STYLE: update SCIFIO module name
BUG: Update loci_tools to 4.4.9
Mark Palmeri (1):
STYLE: correct syntax in Usage line
Martin Müllenhaupt (2):
COMP: host platform source dir check
COMP: host platform source dir check
Matt Clarkson (4):
ENH: Test upper and lower bound of histogram.
BUG: Include upper bound in last histogram bin.
BUG: Updated mean and standard deviation test values.
BUG: Update test data due to changes in itkHistogram.hxx
Matthew McCormick (107):
ENH: Bump CMakeLists.txt version to 4.5.0.
BUG: Remove non-existant GeSignaHDx data references.
ENH: Add server URL to ArchiveTestingData script.
ENH: Add slicer.kitware.com to the list of ExternalData resources.
COMP: OpenJPEG #ifdef WIN32 not reliable ITK-3101.
DOC: Improve grammar in transform float type migration guide.
STYLE: Style fixes for MINCTransformIO.
BUG: Remove non-existant GeSignaHDx data references.
BUG: Regenerate HeaderTests' after .hxx files are removed.
COMP: Update MINCTransformIO for templated transforms.
COMP: Do not warn about unused typedefs.
COMP: Fix argument 'buffer' might be clobbered on GCC 4.8.
COMP: Wrap TransformBaseTemplate, Transform, and TransformFile{Reader,Writer}.
DOC: SingelThreaded -> SingleThreaded in Doxygen Group.
ENH: Change PATCH version for v4.4.1 release.
BUG: Add missing ITKOpenJPEG dependency for ITKReview Module.
COMP: ITKOpenJPEG EXCLUDE_FROM_ALL.
COMP: Fix invalid Doxygen LaTeX formula.
BUG: Fix Module_Review enable with a single configure.
COMP: Wrap cost functions for templated precision.
BUG: Fix Module_Review enable with a single configure.
DOC: Fix GradientDescentOptimizer doc grammar.
BUG: Using consistent naming for Transform template name change.
BUG: Remove unused QUASI_NEWTON_STEP_ERROR.
COMP: Do not try to include float.h for MinGW.
STYLE: TScalarType -> TScalar
COMP: Fix NIFTI CMake variable separation warning.
ENH: Use Transform::Clone() in ImageToImageMetric.
COMP: Remove redundant Typename structs. #3195.
STYLE: Fix include guard in level set visualization.
ENH: Use file(COPY .. instead of exec_process.
COMP: Fix transform wrapping errors with ITK_WRAP_double OFF.
DOC: Fix spelling errors in FourierDescriptors1.cxx.
BUG: Fix ITK_USE_REVIEW compatibility set syntax.
COMP: Avoid MetaIO config conflict with USE_SYSTEM_GDCM.
BUG: itkSingleLevelSetsv4WhitakerImage2DTest output clobber.
ENH: Test conversion writing float transform with templateless writer.
BUG: BMPImageIO buffer size computation.
COMP: Bump GCCXML version.
Revert “BUG:`` ``Exclude`` ``ITKReview`` ``when`` ``ITK_USE_REVIEW`` ``if`` ``off.”
Revert “BUG:`` ``Exclude`` ``ITKReview`` ``when`` ``ITK_USE_REVIEW`` ``if`` ``off.”
COMP: Do not try to include float.h for MinGW.
BUG: itkSingleLevelSetsv4WhitakerImage2DTest output clobber.
COMP: Avoid MetaIO config conflict with USE_SYSTEM_GDCM.
COMP: Bump GCCXML version.
ENH: Bump version to 4.4.2.
COMP: Fix LevelSetsv4Visualization against VTK5.
BUG: Fix LevelSetsv4Visualization Doxygen group.
BUG: Add QuickViewTest baseline for dash5ubuntu.
BUG: Exclude all VTK headers from the header test.
ENH: Improve ImageRegionReverseConstIterator doc.
COMP: Add missing wrapping for ImageSourceCommon.
COMP: Add missing VectorContainer instantiations for PointSet.
STYLE: Use prefix increment in WeightedCovarianceSampleFilter.
STYLE: LabelMap related style fixes.
BUG: LabelMapToLabelImageFilter wrong superclass in itkTypeMacro.
BUG: MeasurementVectorSizeType in PointSetToListSampleAdaptor.
BUG: Re-use Superclass typedef's in LabelMapToLabelImageFilter.
COMP: TranformIOBase unused GetTypeNameString function.
COMP: TransformFileWriter unused AddToTransformList.
STYLE: Fix KWStyleCodeTest - unnecessary semi-colons.
COMP: Update MINCTransformIO for GetTypeNameString method.
BUG: Fix uninitialized variables in N4BiasFieldCorrectionImageFilter.
ENH: Remove unused scripts in Utilities/Dart.
BUG: Fix uninitialized variables in N4BiasFieldCorrectionImageFilter.
ENH: Add maintenance script to visualize test times.
ENH: Add a RUNS_LONG label to long running tests.
BUG: Enable MRC IO in UseITK whenever the ITKReview module is enabled.
BUG: Fix Wrapping link to VtkGlue with VTK 6.
COMP: Remove multiple definition of PushBackTransformList.
COMP: Fix NIFTI CMake variable separation warning.
BUG: ImageToImageFilter different Input2 pixel type does not stream. #3214
COMP: Clean up use of Dimensions in MetaImageIO.
COMP: Conditionalize insane “#define`` ``inline” in libtiff
COMP: QuadrilateralCell Out-of-bounds-write.
COMP: Out-of-bounds access GaussianDerivativeImageFunction.
ENH: Use CompensatedSummation in GaussianDerivativeImageFunction.
ENH: Improve const correctness of QuadrilateralCell.
BUG: Add double-conversion license.
ENH: Add check for LICENSE change on double-conversion update.
BUG: Fix removal of temporary double-conversion repository.
COMP: Catch TestDriver ExceptionObject.
BUG: Add missing OpenJPEG LICENSE file.
BUG: Add missing PNG license.
BUG: AntiAliasBinaryImageFilter needs SetUseImageSpacing(false).
DOC: Flat refers to binary in FlatStructuringElement.
BUG: Examples should not have namespace KWStyle check.
DOC: Recommend newer BSplineTransform over BSplineDeformableTransform.
COMP: Do not warn about unused typedefs.
BUG: 14th Ann Incorrect enum declaration.
COMP: 14th Ann uninitialized scalar field.
STYLE: Empty lines exceed 3.
COMP: 14th Ann operator= should return TreeIteratorBase &
BUG: Incorrect CDash URL in CTestConfig.cmake.
DOC: Remove reference to missing AddFileNames method.
COMP: TIFFImageIO: use types defined in itkIntTypes.h.
COMP: 14th Ann Uninitialized pointer field.
COMP: 14th Ann m_ChangePosition not initialized in constructor.
PERF: 14th Ann TreeNode: prefer prefix ++/--
COMP: 14th Ann *Command m_This not initialized.
STYLE: 14th Ann Reduce variable scope.
STYLE: 14th Ann reduce scope of variables.
STYLE: 14th Ann operator= return Self &.
PERF: 14th Ann prefix ++ operator on non-primative types.
STYLE: 14th Ann reduce variable scope.
ENH: Bump GCCXML to latest version.
ENH: Update doxygen.config for 1.8.5.
Mickael Savinaud (1):
COMP: fix compiler error from visual studio 2013
Nick Tustison (2):
ENH: Added B-spline registration test.
ENH: Accessing optimizer weights from the methods.
Olivier Commowick (4):
COMP: Add cmake tr1 namespace check for macos clang
COMP: Use ZeroValue instead of Zero for clang macos 10.9 compilation
COMP: Use ZeroValue instead of Zero for clang macos 10.9 compilation
COMP: Add cmake tr1 namespace check for macos clang
Pew-Thian Yap (1):
BUG: Defined equality and inequality operators.
Sean McBride (1):
COMP: Fixed compiler error in C++11
Simon Alexander (1):
COMP: compilation failures encountered with Visual Studio 2013
Stephen Aylward (7):
BUG: Fixed bugs in Form and hidden virtual funcs in Image
COMP: Fixed unused variable warnings in tests
COMP: Disable tests since paths are set wrong in VTK
BUG: Fixed bugs in Form and hidden virtual funcs in Image
COMP: Fixed unused variable warnings in tests
COMP: Disable tests since paths are set wrong in VTK
COMP: Fix warnings from VTK dashboard, contributed by Sean McBride
Sureerat Reaungamornrat (1):
ENH: Make SetFixedImageRegion a virtual function
Taylor Braun-Jones (1):
COMP: Remove unused TransformFileWriter::m_Precision ivar
Tobias Maier (2):
BUG: VTKImageIO did not respect endianness for streamed writing/reading
BUG: Uninitialized value in VTKImageIOStreamTest
Vladimir S. FONOV (6):
BUG: Fixing small bugs in MINC IO Module
COMP: Fixed building review statistics with gcc 4.7.
BUG: Fixed bugs in Modules/IO/MINC and Modules/ThirdParty/MINC
ENH: Added adapter class to use general_transform API from MINC
ENH: Added adapter class to use general_transform API from MINC
BUG: Fixed error handling in MINC IO
Xiaoxiao Liu (30):
DOC: Add a comment for “ITK_Common_EXPORTS”
ENH: Add a unit test for VectorImageToImageAdaptor.
COMP: Relax tolerance for a regression test.
ENH: Exclude ITKGDCM module when system GDCM is ON.
BUG: Exclude ITKReview when ITK_USE_REVIEW if off.
BUG: A fix for using sys installed GDCM.
BUG: ITK_USE_Review did not turn Review module ON.
ENH: Simplify the steps to build remote modules.
ENH: Turn remote module LSTK off by default.
ENH: Deprecate ITK_USE_REVIEW.
DOC: Migration guide for ITK_USE_REVIEW deprecation.
ENH: Remote module names need to be consistent.
COMP: New baseline image for MultiResImageRegistrationTest.
PERF: Remove redundant CMake variables.
DOC: Sort the module enabling messages by names.
ENH: Exclude ITKGDCM module when system GDCM is ON.
BUG: A fix for using sys installed GDCM.
COMP: New baseline image for MultiResImageRegistrationTest.
ENH: Remove “ITK” prefix from remote modules.
BUG: Update LSTK module tag.
STYLE: Extract module dependency code to a separate file.
COMP: Fix LSTK warning.
COMP: Fix cmake warnings on EXCLUDE_FROM_ALL.
DOC: Better warning message for ITK_BUILD_ALL_MODULES.
BUG: Coverity resrouce leak in itkQuadEdgeTest1.
COMP: Fix coverity bug in itkQuadEdgeTest.
BUG: Resource leak in testMetaObject.cxx.
COMP: Coverity scan resource leak in itkQuadEdgeTest.
BUG: Fix typos in globalIndexNames.
BUG: Fix typos in globalIndexNames.
List of changes in ITKApps since v4.4.0-apps
Bill Lorensen (1):
ENH: Bump ITK version to 4.5.0
Matt McCormick (4):
COMP: Add missing header to MIMApplicationBase.txx.
COMP: Add missing this-> to derived method calls.
STYLE: LandmarkRegistrator: whitespace towards ITK Style.
COMP: Better use of typedefs in LandmarkRegistrator.