ITK Release 5.0 Beta 3¶
We are happy to announce the Insight Toolkit (ITK) version 5 Beta 3 release! :tada: This release celebrates the community’s migration to GitHub. :octocat: As a true open source project, community participation is a high priority. :handshake: Our migration to GitHub facilitates collaboration with the broader scientific open source community. :microscope:
This release also includes major improvements in the areas of performance and third party libraries. A new, experimental ImageRange
class enables iteration over an image’s pixels in a modern, performant way. Fundamental ITK data structures were improved to enabled compiler optimizations for Plain Old Data objects. VXL was modernized to C++11, and Eigen is now available in the toolkit; ITK’s gradual transition from VXL to Eigen for linear algebra has begun.
In addition, four new remote modules are available, FFT’s can be computed on the GPU via cuFFTW, and ITK Python’s itk.imread
now supports image series. More information can be found in the feature summary below.
For an overview of ITK 5’s transition to modern C++, performance-related changes, and the new, Pythonic API, see the ITK 5 Alpha 1: Modern C++, ITK 5 Alpha 2: Performance, and ITK 5 Beta 1: Pythonic Interface release announcements.
GitHub Migration¶
GitHub now hosts the official ITK, ITKExamples, and ITKSoftwareGuide Git repositories:
https://github.com/InsightSoftwareConsortium/ITKExamples.git
https://github.com/InsightSoftwareConsortium/ITKSoftwareGuide.git
The InsightSoftwareConsortium GitHub Organization is currently home to 88 other ITK-related repositories. Many of these repositories are externally developed ITK modules. If you would like create a new repository or transfer a repository to the InsightSoftwareConsortium GitHub organization, let us know on ITK’s Discourse discussion forum.
Documentation on how to contribute has been updated and improved. Contribution documentation is available in the ITK Software Guide and as Markdown files in the source code repository, browsable in GitHub’s web interface. Our CONTRIBUTING.md file is a starting point for contributors. We also have a Git cheatsheet for quick reference.
Our Code of Conduct describes our motivation to build impactful, open source image analysis software through a welcoming and productive community. The Code of Conduct also describes our values: to be open, welcoming, inclusive, civil and considerate, respectful, collaborative, careful in the words that we choose, responsible, and inquisitive. We expect community members to lead by example, but we also define a set of unacceptable behaviors and mechanisms to enforce conduct violations.
To guide submission of pull requests and issues, we created templates used when issues and pull requests are opened. Release notes from previous releases were migrated from the Wiki; release notes can be browsed in repository Markdown files.
Plans for upcoming releases can now be found in the project GitHub Milestones. Release artifacts will now be published on ITK’s GitHub Releases as opposed to Sourceforge. Release artifact archives are now also available in the ITK data.kitware.com Girder Collection.
The ./Utilities/SetupForDevelopment.sh
script now guides repository configuration for GitHub contributions. Git client-side hooks help submit a well-formatted commit message. Git aliases, review-push
and pr
, are provided to submit pull requests for review and download submitted pull requests for local testing.
A new cross platform script, ITK/Utilities/UploadBinaryData.sh
, is available to upload binary testing data. This script, invoked directly or through the data-upload
alias, performs an authenticated upload to data.kitware.com and generates an ExternalData content link to avoid inflation of the source code repository’s size. This script can be used to upload testing data for ITK or an externally developed module.
A static archive of our previous code review system, the https://review.source.kitware.com/ Gerrit Code Review instance, was created to preserve the code review discussions for nearly 24,000 changes on ITK and other Kitware supported projects.
Continuous integration testing ensures the continued quality and productive development of the toolkit. CircleCI and Azure Pipelines CI testing run over 2,800 regression tests on Linux, macOS, and Windows for both C++ and Python builds. Pull requests content is checked by ghostflow-director to prevent integration of large files, etc.
We now track issues in the repository’s GitHub Issue Tracker. The legacy JIRA issue tracker is now read-only, and it will remain available for reference.
Performance Improvements¶
A new, experimental
ImageRange
class provides range-based iteration over the pixels of anitk::Image
.The Rule of Five was applied to basic data structures like
itk::FixedArray
,itk::Point
,itk::Vector
so they satifystd::is_trivial
andstd::is_standard_layout
. This is now also tested. This enables compiler optimizations and moves.ResampleImageFilter::CastPixelWithBoundsChecking
is now faster.Data copies in
itk::BSplineTransform
were reduced.The number of evaluations in line search optimizer were reduced by half.
Third Party Updates¶
The Eigen linear algebra third party library is now available as an ITK module, and it is enabled by default.
VXL was updated to require C++11 and use modern C++ syntax
GDCM, Zlib and GIFTI were updated to the latest upstream.
Remote Modules¶
The result of phase symmetry filtration of a cardiac ultrasound B-mode volume. From Hatt C. “Multi-scale Steerable Phase-Symmetry Filters for ITK.” The Insight Journal. July-December. 2011. https://hdl.handle.net/10380/3330
New Remote Modules added:
PhaseSymmetry
Multi-scale steerable filters for computing phase symmetry (PS).
From Hatt C, “Multi-scale Steerable Phase-Symmetry Filters for ITK”, https://hdl.handle.net/10380/3330
Enable in an ITK build by setting
Module_PhaseSymmetry=ON
.Install Python packages:
pip install itk-phasesymmetry
IOOpenSlide
Read file formats supported by the OpenSlide library. These are generally TIFF-based microscopy formats.
Enable in an ITK build by setting
Module_IOOpenSlide=ON
.Currently requires a system installation of the OpenSlide library.
Montage
Montaging for microscopy imaging files.
Based on Bican, J., “Phase Correlation Method for ITK”, https://hdl.handle.net/1926/396, in addition to many improvements.
Enable in an ITK build by setting
Module_Montage=ON
.
BSplineGradient
Approximate an image’s gradient from a B-spline fit to its intensity.
https://github.com/InsightSoftwareConsortium/ITKBSplineGradient
Enable in an ITK build by setting
Module_BSplineGradient=ON
.
The itk::JPEG2000ImageIO
class was migrated out the ITKReview
module into its own module, ITKIOJPEG2000
, and enabled by default.
Frequency Domain Support¶
Added
itk::HalfHermitianFrequencyIterator
: iterate over images in the frequency domain generated with theitk::RealToHalfHermitianForwardFFTImageFilter
Support for Fast Fourier Transforms (FFTs) computed on NVIDIA GPUs via cuFFTW: enable by setting
ITK_USE_CUFFTW=ON
.
Python¶
itk.imread
now supports reading image file series.Shorthand setting of parameters of filters in
.New()
or the procedural Python interface now supports passing tuples to set multi-valued parameters.
To install the 5.0 Beta 3 Python packages, run
python -m pip install --upgrade pip
python -m pip install --upgrade --pre itk
What’s Next¶
There are many more bug fixes and critical improvements not mentioned above. For more details, please see the change log below. Congratulations and thank you to everyone who contributed to this release.
The ITK 5 Migration Guide is available to help transition a code base from ITK 4 to ITK 5. Please discuss your experiences on Discourse. We are approaching the 5.0.0 final release! The next release will be the first ITK 5 release candidate; it is scheduled for the end of January.
Enjoy ITK!
Changes from v5.0b01 to v5.0b03
-----------------------------------------------
Note: ITK v5.0b02 was skipped due to a build error with Visual Studio.
Bai Shi (1):
COMP: To fix compilation error of "cannot dynamic_cast 'x'
Bradley Lowekamp (47):
DOC: Improve Extract exception for region size mismatch
BUG: Print ImageIOBase::m_Spacing
BUG: Fix TIFFImageIO spacing for multi-page
BUG: Support ITK transform files with corrected group names
ENH: Only use one Work Unit in BSpline convergence checker
BUG: Fix HDF5ImageIO reporting any HDF5 file is readable
ENH: Improve N4BiasFieldCorrectionImageFilter
ENH: Add extensions to HDF5ImageIO
ENH: Add ImageIO methods to check name for file extensions
BUG: Quiet HDF5-DIAG from H5File::isHdf5
ENH: Update LabelStatistics to use dyanmic threading
ENH: Move JPEG200 ImageIO into separate ImageIO module
BUG: Update SCIOFIO to ITKv4.13 branch
ENH: Make ProcessObject::VerifyInputInformation constant
BUG: Handle boundary case with max metric
PERF: Reduce number of evaluations in line search optimizer by half
COMP: Fix unused argument warnings in SpatialObjectPoint::operator=
BUG: Handle boundary case with max metric
ENH: Update ImageToHistogram to use modern dynamic threading.
PERF: implement concurrent histogram merge/reduce
BUG: Fix move of histogram smart pointer
BUG: Add parameter which stores the requested number of work units.
BUG: use =default for default implementation of destructor
BUG: Prevent square root of negative number
BUG: Check all entries are not null
STYLE: Prefer immediate exception over long if
BUG: Fix sqrt of negative values
BUG: Address valgrind leaks for classes which use ScanlineFilterCommon
BUG: Limit number of threads used for testing ITK
ENH: Replace centered transforms with non-centered versions
BUG: Remove static member function variable
DOC: Fix LBFBS2 typo
BUG: Remove static member function variable
BUG: Fix multi-resolution bspline registration example
BUG: Adding updated baseline image for improved example
DOC: Fix typos in LBFGS2 optimizer's error string
ENH: On Azure DevOps only show test output on failure
STYLE: Use GTest file name suffix for Google Test based tests
BUG: Remove unused TRansfromDomainDirectionInverse IVAR
BUG: Synchronize BSpline MeshDomain parameters from fixed params
ENH: Adding GTest for BSplineTransform
ENH: Create method to set transform domain params from coeff images
BUG: Synchronize BSpline MeshDomain parameters from fixed params
ENH: Refactor BSplineTransform
DOC: Update the BSplineTransform class doxygen
ENH: Update N4BiasField to utilized named positional inputs
COMP: Addressed unused parameter warning in ImageRegion default
Brian Helba (1) @brianhelba :
BUG: Ensure that itkSampleToHistogramFilterTests fail on errors
Dženan Zukić (50) @dzenanz :
ENH: code simplification and more granular progress reporting
ENH: return bin maximum as threshold
STYLE: removing void if used in place of empty parameter list
ENH: update remote module MorphologicalContourInterpolation
BUG: nbOfThreads was bounded to GlobalMaximumNumber, but not work units
ENH: Ignore current load in PoolMultiThreader
COMP: missing ConstPointer declaration
BUG: fix crash in RegionGrowingBenchmark
ENH: reducing duplication in 4 scanline-based image filters
ENH: use scanline iterators and clean up the code a little
COMP: fix [-Wc++11-narrowing] in initializer list during Python wrapping
ENH: refactor ConnectedComponent to not use Barrier. Also reduce duplication.
STYLE: aligning macro continuation backslash
COMP: fixing unused variable warning
COMP: add Python wrapping for ScanlineFilterCommon
ENH: updating remotes to their latest versions
DOC: mentioning ITKV4_COMPATIBILITY in the migration guide
COMP: minor fixes in preparation for deprecating atomic, mutex and friends
ENH: updating remotes to latest versions
ENH: using standard library's mutex primitives
ENH: deprecating functionality which exist in C++11 standard library
COMP: missing #include <condition_variable>
BUG: clamp work units to ITK_MAX_THREADS in Platform and Pool MultiThreaders
BUG: fix Python wrapping after deprecating MutexLock and friends
ENH: adding new remote modules: Montage and BSplineGradient
DOC: fixing copy-paste error about functor type
ENH: improve precision of median calculation by default
STYLE: minor space and line break improvements
ENH: FrequencyBandImageFilter derives from UnaryFrequencyDomainFilter
ENH: ITKv5_CONST macro for VerifyPreconditions() and VerifyInputInformation()
ENH: ITKv5_CONST macro for VerifyPreconditions() and VerifyInputInformation()
BUG: background label could be the same as one of the object labels
COMP: fix compiler warning in itkIndexRange.h
ENH: adding wrapping for UnaryFrequencyDomainFilter
DOC: updating commit information for ITKv5_CONST in ITK 4.13.x
ENH: commit message script uses GitHub issue referencing format.
ENH: update Montage remote module
BUG: test image was not properly initialized. Closes #207.
COMP: fixing compile errors on Ubuntu 16.04 with GCC 5.4.0
ENH: compile VNL in parallel on Visual Studio
COMP: fix compile errors with CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS:BOOL=ON
COMP: Remove VNL_EXPORT from header only class. Closes #191.
COMP: fix CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS
COMP: fix link errors coming from undefined static constexpr member
STYLE: rename template parameter TMatrixDimension into VDimension
DOC: EigenValues parameter uses operator[], not operator[][]
COMP: compile with Visual Studio in conformance mode AKA /permissive-
COMP: moving the default constructor of vnl_matrix from .h into .hxx
STYLE: removing empty lines between comments and constructors
ENH: enable progress reporting with ITKV4_COMPATIBILITY. Closes #228.
Eigen Upstream (1):
Eigen3 2018-11-19 (493fa50e)
Francois Budin (9) @fbudin69500 :
BUG: THEADER instead of THREADER
BUG: Disable using mkl_tbb_thread
ENH: Adding IOOpenSlide ImageIO remote module to ITK
BUG: WRAP_2 is a local variable, not a CACHE variable
BUG: Wrong path to baseline images
ENH: Allow selecting ImageIO in Python template code
ENH: Support loading image series in itkTemplate.
ENH: `itk.imread()` now supports image series
ENH: Support for tuples passed as arguments through itkTemplate New() function
GDCM Upstream (2) @malaterre :
GDCM 2018-11-05 (3ffbf1ed)
GDCM 2018-11-30 (ec82fb48)
Gabriel A. Devenyi (1) @gdevenyi :
PERF: Enable MINC internal compression by default
Hans Johnson (58) @hjmjohnson :
COMP: Prefer snprintf to avoid buffer overruns
STYLE: Use modern C++11 =delete to indicate not implemented
ENH: Update KWStyle hash to build latest updates
STYLE: Prefer error checked std::stoi over atoi
BUG: GE4IO atoi failures resulted in implicit 0 image slices
BUG: Commandline arguments were not properly processed
BUG: atoi failure => 0 hid processing failures
BUG: Command line parsing silently failed
STYLE: Prefer error checked std::stod over atof
BUG: Failed conversion to float with uncaught failure
STYLE: Pefer = default to explicitly trivial implementations
COMP: Use nullptr instead of 0 or NULL
STYLE: Replace defines with constexpr and using statements
COMP: Fix VS2017 compilation regression
COMP: Use static method from class directly
STYLE: Remove support for pre 20160229 VXL_VERSION_DATE_FULL
STYLE: Decouple matlab printing explicit instantiations
ENH: Adding explicit instantiations for dimensions 1-10
COMP: Remove duplicate explicit instantiations
COMP: Remove unused variables.
BUG: vidl_itk_istream does not override an ITK object
ENH: Use C++11 override for overridden functions.
STYLE: Remove unnecessary vcl_XXX.h headers
ENH: Add scripts to assist with migrations
ENH: Adding a few more clang tidy checks.
BUG: Do not override user selection settings
ENH: Update to require VXL 2.0.0 or later
STYLE: Remove unused include headers
ENH: Provide mechanism for changing git remote url
COMP: Many of the remotes require updates for ITKv5
STYLE: Remove VCL_INCLUDE_CXX_0X outdated reference.
ENH: Add specification for -D__clang__ to clang-tidy
PERF: emplace_back method results in potentially more efficient code
STYLE: Replace integer literals which are cast to bool.
ENH: Fetch upstream as part of setup.
ENH: Stop abort on first failure.
BUG: Default commit message fixed for =delete modernization
ENH: Provide consistency with C++11 core guidelines
BUG: Missing default argment override
ENH: VXL 2.0.0 provides all instantiations needed by ITK
ENH: Fix deficient itkCastImageFilter test
STYLE: Minor variable naming and readability changes.
COMP: Provide conversion range testing valid_static_cast function
ENH: Increase minimum VXL version to 2.0.1 for wrapping
ENH: REVERT compile VNL in parallel on Visual Studio
ENH: Require VXL v2.0.2 release.
ENH: Increase size attribute for large third party file.
STYLE: Remove VXL_VERSION_DATE_FULL conditionals
COMP: Remove duplicate explicit instantiation
ENH: Provide range for non-warned cmake versions
ENH: Update the GIFTI codebase
DOC: Typo: @tparam -> @param fix doxygen generation
DOC: Improved documentation for the migration guide
ENH: Manually update nifti version from github
ENH: Employ the `rule of zero` for aggregate types
STYLE: Use default member initialization
STYLE: Remove the register keyword
ENH: NIFTI needs to be part of ITKTargets
Hui Xie (1) @Hui-Xie :
BUG: The Z spacing was set using thickness
Isaiah Norton (1) @ihnorton :
BUG: don't quote argument to URL_HASH for FFTW
Jon Haitz Legarreta Gorroño (14) @jhlegarreta :
ENH: Improve itkEuclideanDistancePointMetric coverage.
COMP: Use C++11 nullptr directly
DOC: Fix incorrect class ref for Doxygen.
ENH: Bump remote modules to their latest commits.
ENH: Increase coverage for itk::GrayscaleFillholeFilterImage.
DOC: Update the documentation concerning binary data.
DOC: Format remote module documentation README to markdown.
ENH: Update the SmoothingRecursiveYvvGaussianFilter remote module hash.
DOC: Point to the ITK git cheat sheet in the repository.
DOC: Fix the ITK Git cheat sheet file link.
ENH: Add script to priviledge C++11 type alias over typedef.
DOC: Advise users to delete the PR template in message.
DOC: Move the issue and pull request templates to a specialized folder.
ENH: Remove `FindITKPythonLibs.cmake` file.
ENH: Follow remote repositories name changes.
Matthew McCormick (77) @thewtex :
ENH: Synchronize testing data content links
DOC: Updates and improvements on the release process
COMP: Address empty _FILE_OFFSET_BITS in tif_config.h with MinGW64
BUG: Do not warn about FFTW GPL license when using Intel MKL
DOC: Improve ITK_USE_MKL description
BUG: Mark MKL CMake configuration options as advanced
ENH: Add support for NVidia CUDA FFTs via cuFTTW
COMP: Fix HDF5 CMAKE_CROSSCOMPILING_EMULATOR support
COMP: Fix HDF5 itk_h5CX_set_apl implicit declaration
COMP: Use the Platform Threader by default with Emscripten
COMP: Set CMP0074 to NEW
COMP: Fix HDF5TransformIO compatibility with HDF 1.8
COMP: Set CMP0074 in third party libraries
COMP: Do not mark itk::FloatingPointExceptions constructor as deleted
COMP: Define TransformBaseTemplate constructor / destructor
COMP: DataObject InvalidRequestedRegionError unused parameter
COMP: Remove unused orig parameters in DataObject
BUG: Remove unused itk_minc2 imported library statement
BUG: Skip MINC static library build when building shared libraries
COMP: Suppress undefined public symbol warnings in third party libs
BUG: Remove duplicate ITK version number
COMP: Do not install HDF5 static library with BUILD_SHARED_LIBS enabled
COMP: Add override to TransformBaseTemplate destructor
COMP: Avoid GCC 4.8 default destructor internal compiler error
BUG: Import zlib1.rc from ZLib subtree
BUG: Use GlobalDefaultNumberOfThreads for FFTW plans
BUG: Simplify specification of greatest prime factor with cuFFTW
ENH: Add Azure Pipelines configuration
BUG: Remove ResampleImageFilter duplicate number of pixels check
COMP: Avoid Intel compiler warning on unknown deprecated attribute
ENH: Ensure that .sha512 content links have LF newlines
ENH: Configure .gitattributes for ghostflow-director CheckSize
DOC: Update ITK Git Reference for GitHub
DOC: Update CONTRIBUTING.md for GitHub
COMP: Address ITKReview module wrapping following migration of ITKIOJPEG2000
BUG: Migrate Python tests into their modules
ENH: Use Release CMAKE_BUILD_TYPE for macOS Python CI builds
BUG: Remove apt-get install's from macOS Azure Pipeline's configuration
ENH: Update Git client side hooks for GitHub
ENH: Add UploadBinaryData.sh script
COMP: Remove vcl_complex.h from Python builds
BUG: Remove vcl_complex support from itkTemplate.py
BUG: Disable PythonGetNameOfClass test
BUG: Enable ITKIOJPEG2000 by default
DOC: Add Test a Topic to overview section
DOC: Organize code of conduct sub-documents into a folder
DOC: Update Documentation/Introduction.md for GitHub migration
DOC: Fix spelling of "individual" in CONTRIBUTING.md
DOC: Add CI status badges to the README
COMP: Add missing mutex include to itkImageToHistogramFilter.h
PERF: Use initializer list in ShapedImageNeighborhoodRange operator*
DOC: Fix UploadBinaryData.sh link
BUG: Run apt-get update for Linux Azure configuration
COMP: Wrap InPlaceImageFilter for complex float to complex double
BUG: Do not gpg sign third party updates
DOC: Note that a pull request has to be explicitly opened
DOC: Suggest using 72 characters or less in commit hooks
ENH: Ensure NumPy is available for Python tests
BUG: Add missing export specification for XMLReader, XMLWriterBase
BUG: Remove invalid ShapeDetectionLevelSetFilter arguments
COMP: Remove Doxygen \ref, \copydetails commands
STYLE: Improve readability of HexadedronCell::EvaluatePosition.
COMP: Fix IsFloatingPoint concept check for VariableLengthVector
BUG: Set up wrapping options for use in modules
ENH: Add PhaseSymmetry remote module
ENH: Download ExternalData cache for CI builds
DOC: Remove the convention that release branches start with "release"
ENH: Run content link synchronization script
ENH: Add setup-girder-api-key Git Setup script
BUG: Remove ExternalData MD5 content link generation
ENH: Move FreeSurfer Mesh IO into a separate module
DOC: Add missing CONTRIBUTING.md link in UploadBinaryData.md
ENH: Add regression test for reading legacy multi-frame DICOM
COMP: Float narrowing conversion in BSpline class initialization
DOC: Move maintainer documentation into Documentation/Maintenance
DOC: Import release archive notes from the Wiki
DOC: Improve 4.13, 5 release notes from GitHub Releases
Niels Dekker (42) @N-Dekker :
PERF: Made ResampleImageFilter::CastPixelWithBoundsChecking faster
STYLE: NumericTraits::NonpositiveMin() using numeric_limits::lowest()
BUG: Fixed casts to int64_t and double in ResampleImageFilter
ENH: Tested ResampleImageFilter preserves 'double' and int64_t pixels
STYLE: Replaced 'bool pre = 0' by 'bool pre = false'
STYLE: Declared "IsAt" iterator member functions 'const'
DOC: Replaced leading stars ('*') by spaces in Doxygen code blocks
STYLE: Replaced "Hyperrect..." by "Rect..." in class + function names
BUG: Removed underscores from GTest test names
STYLE: Shortened itkShapedImageNeighborhoodRangeGTest test names
STYLE: Declared VerifyPreconditions() member functions 'const'
STYLE: Replaced star ('*') by space in front of Doxygen \code tags
PERF: Made ConstNeighborhoodIterator::GetPixel(i) much faster
ENH: Added GradientNormThreshold to HoughTransform2DCirclesImageFilter
STYLE: Removed unused ShapedImageNeighborhoodRange::m_Image
ENH: Added ConstShapedNeighborhoodIterator::ActivateOffsets(offsets)
DOC: Replaced leading stars ('*') by spaces in indented Doxygen code
ENH: Added GenerateConnectedImageNeighborhoodShapeOffsets()
COMP: Fixed GDCM OpenJPEG name mangling
ENH: Added ShapedImageNeighborhoodRange::SetLocation(index)
COMP: Fixed GDCM OpenJPEG name mangling
ENH: Added HoughTransform2DCirclesImageFilter::UseImageSpacing
ENH: Added IndexRange for efficient region and grid space iteration
COMP: Fixed IndexRange warnings -Wshadow -Wmissing-field-initializers
PERF: unsharpenedImage iterator in N4Bias...Filter is now "WithIndex"
BUG: Avoid premature GaussianDerivative kernel computation HoughCircles
BUG: ShapedImageNeighborhoodRange should not try to avoid rvalue offsets
ENH: Added policy for constant NeighborhoodRange values outside image
STYLE: AccessorFunctor::SetPixelAccessor parameter reference to const
PERF: Removed 'virtual' from Default Pixel Accessor destructors
ENH: Added ImageRange: a range of iterators to the pixels of an image
STYLE: ImageHelper now doing '+=' and using C++11 std::integral_constant
BUG: Fixed ShapedImageNeighborhoodRange copying pixel access parameter
COMP: Fixed ImageRange warning, passing object to variadic constructor
DOC: Did #136 Update migration guide with Hough transform changes
ENH: Added default-constructor and empty() to ImageRange
ENH: ShapedImageNeighborhoodRange now supports any buffered region index
PERF: Defining ImageRange iterator as raw pixel pointer, when possible
ENH: Added Experimental::MakeImageRange(TImage*)
PERF: Replaced postfix ++ calls on ITK iterators by the prefix ++ calls
PERF: Small improvements to equality operators of Image Region classes
PERF: Added C++11 final, noexcept, default, initializers to ImageRegion
Pablo Hernandez-Cerdan (17) @phcerdan :
COMP: Fix hdf5 warning missing perl script
COMP: Fix HDF5 CMake warning policy CMP0075
ENH: Tweak constructors, Ro5 in FixedArray, Point
ENH: Add Ro5 to FixedArray and derived classes
COMP: Fix warnings related to Ro5 changes in FixedArray
ENH: Add Ro5 constructors to SymmetrySecondRankTensor
ENH: Add Ro5 to classes derived from Point
ENH: Initialize SecondRankTensor and RGBPixelType
ENH: Print direction in ImageIOBase
ENH: Add HalfHermitianFrequencyIterator
ENH: Use variadic templates for SetPosition
ENH: Add ThirdParty module Eigen3
COMP: Add CONFIG to find_package(Eigen3)
COMP: Add missing headers SymmetricEigenAnalysis
COMP: Use the right constructors for fixed eigen3 matrix
COMP: Reorder variables associated find_package in Eigen3
ENH: Update external module ITKIsotropicWavelets
Roman Grothausmann (2) @romangrothausmann :
DOC: adjusted to fit more general case n != m
DOC: corrected description of the output
Sean McBride (3) @seanm :
COMP: Added additional HDF5 symbols for mangling
DOC: improved comments about HDF5 symbol mangling
COMP: fixed some -Wunused-template warnings by adding private namespaces
Simon Rit (2) @SimonRit :
BUG: fix NumPy bridge for itk::Image with PixelType itk::Vector
ENH: improve automatic Python ImageFileReader for non-scalar pixel types
Tobias Wood (1) @spinicist :
BUG: Swapped int to SizeType to prevent overflow errors
VXL Maintainers (8):
VNL 2018-11-04 (ea3a2cc9)
VNL 2018-11-08 (88b72533)
VNL 2018-11-14 (ee083096)
VNL 2018-11-15 (4fe68119)
VNL 2018-11-18 (fa7c7abd)
VNL 2018-11-23 (cb6f5dcb)
VNL 2018-11-29 (f6e20c3c)
VNL 2018-12-15 (bb0d2eb6)
Yann Le Poul (4) @YannLePoul :
BUG: make sure the palette is empty when m_IsReadAsScalarPlusPalette is false
DOC: fix rotation spelling issue in some versor related files
STYLE: IsReadAsScalarPlusPalette already printed in parent class
BUG: unnecessary call to GetExpandRGBPalette
Zlib Upstream (1):
zlib 2018-06-11 (355d8648)
allywarner (1) @allywarner :
BUG: CMake build errors
pierre33 (1) @pierre33 :
ENH: Update itkNaryFunctorImageFilter