ITK Release 3.16

This release covers the period May 28 2009 through September 15 2009

New Classes in this Release

Code/Review/itkAggregateLabelMapFilter
Code/Review/itkAutoCropLabelMapFilter
Code/Review/itkBinaryImageToLabelMapFilter
Code/Review/itkBinaryImageToShapeLabelMapFilter
Code/Review/itkBinaryImageToStatisticsLabelMapFilter
Code/Review/itkBinaryShapeKeepNObjectsImageFilter
Code/Review/itkBinaryShapeOpeningImageFilter
Code/Review/itkBinaryStatisticsKeepNObjectsImageFilter
Code/Review/itkBinaryStatisticsOpeningImageFilter
Code/Review/itkChangeLabelLabelMapFilter
Code/Review/itkChangeRegionLabelMapFilter
Code/Review/itkCropLabelMapFilter
Code/Review/itkInPlaceLabelMapFilter
Code/Review/itkLabelImageToShapeLabelMapFilter
Code/Review/itkLabelImageToStatisticsLabelMapFilter
Code/Review/itkLabelMapToBinaryImageFilter
Code/Review/itkLabelObjectAccessors
Code/Review/itkLabelPerimeterEstimationCalculator
Code/Review/itkLabelShapeKeepNObjectsImageFilter
Code/Review/itkLabelShapeOpeningImageFilter
Code/Review/itkLabelStatisticsKeepNObjectsImageFilter
Code/Review/itkLabelStatisticsOpeningImageFilter
Code/Review/itkMergeLabelMapFilter
Code/Review/itkPadLabelMapFilter
Code/Review/itkRegionFromReferenceLabelMapFilter
Code/Review/itkRelabelLabelMapFilter
Code/Review/itkScaleVersor3DTransform
Code/Review/itkShapeKeepNObjectsLabelMapFilter
Code/Review/itkShapeLabelMapFilter
Code/Review/itkShapeLabelObject
Code/Review/itkShapeLabelObjectAccessors
Code/Review/itkShapeOpeningLabelMapFilter
Code/Review/itkShapeRelabelImageFilter
Code/Review/itkShapeRelabelLabelMapFilter
Code/Review/itkShapeUniqueLabelMapFilter
Code/Review/itkShiftScaleLabelMapFilter
Code/Review/itkStatisticsKeepNObjectsLabelMapFilter
Code/Review/itkStatisticsLabelMapFilter
Code/Review/itkStatisticsLabelObject
Code/Review/itkStatisticsLabelObjectAccessors
Code/Review/itkStatisticsOpeningLabelMapFilter
Code/Review/itkStatisticsRelabelImageFilter
Code/Review/itkStatisticsRelabelLabelMapFilter
Code/Review/itkStatisticsUniqueLabelMapFilter

New Tests in this Release

Testing/Code/Common/itkImageFillBufferTest
Testing/Code/Common/itkMathRoundTest

Testing/Code/BasicFilters/itkCannyEdgeDetectionImageFilterTest2
Testing/Code/BasicFilters/itkStreamingImageFilterTest3

Testing/Code/IO/itkDICOMImageSeriesTest2
Testing/Code/IO/itkFileFreeImageIO
Testing/Code/IO/itkFileFreeImageIOFactory
Testing/Code/IO/itkImageFileReaderDimensionsTest
Testing/Code/IO/itkImageSeriesReaderDimensionsTest
Testing/Code/IO/itkIOPluginTest
Testing/Code/IO/itkLargeImageWriteConvertReadTest

Testing/Code/Review/itkAggregateLabelMapFilterTest
Testing/Code/Review/itkAutoCropLabelMapFilterTest1
Testing/Code/Review/itkBinaryImageToLabelMapFilterTest
Testing/Code/Review/itkBinaryImageToShapeLabelMapFilterTest1
Testing/Code/Review/itkBinaryImageToStatisticsLabelMapFilterTest1
Testing/Code/Review/itkBinaryShapeKeepNObjectsImageFilterTest1
Testing/Code/Review/itkBinaryShapeOpeningImageFilterTest1
Testing/Code/Review/itkBinaryStatisticsKeepNObjectsImageFilterTest1
Testing/Code/Review/itkBinaryStatisticsOpeningImageFilterTest1
Testing/Code/Review/itkChangeLabelLabelMapFilterTest
Testing/Code/Review/itkChangeRegionLabelMapFilterTest1
Testing/Code/Review/itkCropLabelMapFilterTest1
Testing/Code/Review/itkLabelImageToShapeLabelMapFilterTest1
Testing/Code/Review/itkLabelImageToStatisticsLabelMapFilterTest1
Testing/Code/Review/itkLabelMapToBinaryImageFilterTest
Testing/Code/Review/itkLabelShapeKeepNObjectsImageFilterTest1
Testing/Code/Review/itkLabelShapeOpeningImageFilterTest1
Testing/Code/Review/itkLabelStatisticsKeepNObjectsImageFilterTest1
Testing/Code/Review/itkLabelStatisticsOpeningImageFilterTest1
Testing/Code/Review/itkMergeLabelMapFilterTest1
Testing/Code/Review/itkOptMattesMutualInformationImageToImageMetricThreadsTest1
Testing/Code/Review/itkPadLabelMapFilterTest1
Testing/Code/Review/itkRegionFromReferenceLabelMapFilterTest1
Testing/Code/Review/itkRelabelLabelMapFilterTest1
Testing/Code/Review/itkReviewTests4
Testing/Code/Review/itkScaleVersor3DTransformTest
Testing/Code/Review/itkShapeKeepNObjectsLabelMapFilterTest1
Testing/Code/Review/itkShapeLabelObjectAccessorsTest1
Testing/Code/Review/itkShapeOpeningLabelMapFilterTest1
Testing/Code/Review/itkShapeRelabelImageFilterTest1
Testing/Code/Review/itkShapeRelabelLabelMapFilterTest1
Testing/Code/Review/itkShapeUniqueLabelMapFilterTest1
Testing/Code/Review/itkShiftScaleLabelMapFilterTest1
Testing/Code/Review/itkStatisticsKeepNObjectsLabelMapFilterTest1
Testing/Code/Review/itkStatisticsOpeningLabelMapFilterTest1
Testing/Code/Review/itkStatisticsRelabelImageFilterTest1
Testing/Code/Review/itkStatisticsRelabelLabelMapFilterTest1
Testing/Code/Review/itkStatisticsUniqueLabelMapFilterTest1

New Examples in this Release

Examples/Filtering/GrayscaleFunctionDilateImageFilter

Examples/IO/DicomSeriesReadGaussianImageWrite
Examples/IO/IOExamples
Examples/IO/VisibleHumanPasteWrite
Examples/IO/VisibleHumanStreamReadWrite

New Utilities in this Release

Utilities/vxl/core/vnl/Templates/vnl_matrix_fixed+double.5.5-

This release covers the period May 28 2009 through September 15 2009

Changes in this Release

CMakeLists.txt
    ENH: Increasing minor version number, in preparation for the release of ITK 3.16.
    COMP: To silence linker warnings on cygwin and mingw, added -Wl,--enable-auto-import to linker commands. Also, added CMAKE_SHARED_LIBRARY_CREATE_CXX_FLAGS for mingw.
    STYLE: type Optimizer to Optimized
    ENH: Removed unnecessary ITK_USE_PORTABLE_ROUND cmake variable and added Floor and Ceil functions to itk::Math namespace

CTestConfig.cmake

DartConfig.cmake

itkConfigure.h.in
    ENH: Removed unnecessary ITK_USE_PORTABLE_ROUND cmake variable and added Floor and Ceil functions to itk::Math namespace

CMake/itkSampleBuildTest.cmake.in
    ENH: Removed unnecessary ITK_USE_PORTABLE_ROUND cmake variable and added Floor and Ceil functions to itk::Math namespace

Code/Algorithms/itkBinaryMask3DMeshSource
    COMP: Empty instantiation of itk::Image< unsigned short, 3 > trigger a duplicated symbol error during linking several .o files where this file has been included. It doesn't seem to be still needed, maybe since the input image type can be specified.

Code/Algorithms/itkBioCellularAggregate
    COMP: fix some unitialized points which create a warning with gcc-4.4.0

Code/Algorithms/itkCurvatureFlowFunction
    BUG: 7567. Should use PixelRealType for intermediate computations.

Code/Algorithms/itkCurvatureRegistrationFilter
    COMP: fix warnings about unused method parameters, and shadowed declarations of variable.

Code/Algorithms/itkDeformableSimplexMesh3DGradientConstraintForceFilter
    BUG: Fixing API for setting the input image. It should use the itkSetConstObjectMacro().

Code/Algorithms/itkFEMRegistrationFilter
    COMP: fix some uninitialized variables for gcc-4.4.0. and return value in operator = for QuadEdgeMeshFrontIterator

Code/Algorithms/itkFastMarchingUpwindGradientImageFilter
    ENH: for consistency with the other TargetReachedModes, make m_TargetValue reflect the last (largest) value of the Eikonal solution generated while fast marching, instead of keeping it set to zero

Code/Algorithms/itkFastMarchingUpwindGradientImageFilter
    ENH: for consistency with the other TargetReachedModes, make m_TargetValue reflect the last (largest) value of the Eikonal solution generated while fast marching, instead of keeping it set to zero

Code/Algorithms/itkImageKmeansModelEstimator
    COMP: Per cppcheck, free locally allocated memory before possibly throwing an exception

Code/Algorithms/itkImageToImageMetric
    BUG: Fixed a discrepency in the API of the optimized and standard image to image metric. This implies deprecating the use of volatile image masks.

Code/Algorithms/itkLevelSetMotionRegistrationFilter
    STYLE: Fix the warnings produced by doxygen during WrapITK build.

Code/Algorithms/itkMRFImageFilter
    ENH: Removed unnecessary ITK_USE_PORTABLE_ROUND cmake variable and added Floor and Ceil functions to itk::Math namespace

Code/Algorithms/itkMattesMutualInformationImageToImageMetr
    ENH: The test for samples mapping outside of the moving image buffer was too stringent. In the future a method will be added to set this parameter. For now, it is changed from 4 to 16 as suggested by Simon Warfield.

Code/Algorithms/itkMeanSquaresImageToImageMetric
    STYLE: Improved documentation, MeanSquaresImageToImageMetric really computes the mean of squared differences and not its sum. Thanks to Ramón Casero Cañas for the feedback.

Code/Algorithms/itkMinMaxCurvatureFlowFunction
    ENH: Removed unnecessary ITK_USE_PORTABLE_ROUND cmake variable and added Floor and Ceil functions to itk::Math namespace

Code/Algorithms/itkMultiResolutionPyramidImageFilter

Code/Algorithms/itkRGBGibbsPriorFilter
    COMP: possibly uninitialized variable warning.

Code/Algorithms/itkRecursiveMultiResolutionPyramidImageFilter

Code/Algorithms/itkSimplexMeshVolumeCalculator
    COMP: suppress possible uninitialized variable warning.

Code/Algorithms/itkVoronoiSegmentationImageFilterBase
    COMP: The SetSeeds() method makes wrapitk produce invalid instantiation of std::_Vector_iterator with msvc8 - provide another method which take a whole vector of points, and hide this one when building wrapitk.

Code/BasicFilters/itkAnisotropicDiffusionImageFilter

Code/BasicFilters/itkBilateralImageFilter
    STYLE: Changed raw numbers to use vnl's numeric constants
    BUG:2078 and 5692. Removed incorrect floor function and replaced it by itk::Math::Floor

Code/BasicFilters/itkCannyEdgeDetectionImageFilter
    BUG: 9431 Fix to enable the canny edge detector to produce the correct results when called multiple times. Due to grafting the mini pipeline would be execute correctlya second time. Also the edge list would not always remove elements. STYLE: replaced numeric constants with numeric traits.

Code/BasicFilters/itkConnectedComponentImageFilter
    BUG: #7739. Output pixel type must be an integer.

Code/BasicFilters/itkConnectedThresholdImageFilter
    COMP: fixed gcc compiler warning, see bug 4618

Code/BasicFilters/itkDiscreteGaussianImageFilter
    BUG: the header file was not included

Code/BasicFilters/itkGaussianImageSource

Code/BasicFilters/itkGaussianImageSource

Code/BasicFilters/itkHMaximaImageFilter
    BUG: dynamic cast failure if input and output types for the filter were different. Inserted a CastImageFilter prior to the Graft().

Code/BasicFilters/itkHMinimaImageFilter
    BUG: dynamic cast failure if input and output types for the filter were different. Inserted a CastImageFilter prior to the Graft().

Code/BasicFilters/itkNarrowBand
    COMP: Try to resolve type conflict between .h and .txx uncovered by ICC compiler.

Code/BasicFilters/itkNarrowBand
    COMP: Remove commented code.

Code/BasicFilters/itkPadImageFilter

Code/BasicFilters/itkPasteImageFilter

Code/BasicFilters/itkPasteImageFilter

Code/BasicFilters/itkRandomImageSource

Code/BasicFilters/itkRandomImageSource

Code/BasicFilters/itkRecursiveSeparableImageFilter
    BUG: filter does not manages regions correctly for pipelined streaming. The RecursiveSeparableImageFilter only needs the entire image in the direction that it is separated into. The GenerateInputRequesed region was removed, since the default works, and the EnlargeOutputRequestedRegion was modified to only set the "Direction" dimension to the largest.

Code/BasicFilters/itkRecursiveSeparableImageFilter
    BUG: filter does not manages regions correctly for pipelined streaming. The RecursiveSeparableImageFilter only needs the entire image in the direction that it is separated into. The GenerateInputRequesed region was removed, since the default works, and the EnlargeOutputRequestedRegion was modified to only set the "Direction" dimension to the largest.

Code/BasicFilters/itkScalarConnectedComponentImageFilter

Code/BasicFilters/itkShrinkImageFilter
    BUG: With centered pixels, cygwin was crashing. The input requested region may require an edge to edge sampling.
    STYLE: Changed raw numbers to use vnl's numeric constants

Code/BasicFilters/itkSignedMaurerDistanceMapImageFilter
    STYLE: Fix the warnings produced by doxygen during WrapITK build.

Code/BasicFilters/itkSimplexMeshAdaptTopologyFilter
    COMP: fix some uninitialized points. fix shadowed declaration.

Code/BasicFilters/itkSimplexMeshAdaptTopologyFilter
    COMP: fix some unitialized points which create a warning with gcc-4.4.0

Code/BasicFilters/itkSimplexMeshToTriangleMeshFilter
    COMP: fix some uninitialized points. fix shadowed declaration.

Code/BasicFilters/itkVectorGradientMagnitudeImageFilter
    STYLE: Changed raw numbers to use vnl's numeric constants

Code/Common/itkAffineTransform
    STYLE: Fixed documentation about the parameters of AffineTransform and Rigid3DTransform. The first parameters are the matrix elements in row-major order an not column-major.

Code/Common/itkAutoPointer
    COMP: operator= is not const in AutoPointer

Code/Common/itkBSplineInterpolationWeightFunction
    BUG:2078 and 5692. Removed incorrect floor function and replaced it by itk::Math::Floor

Code/Common/itkCellInterface
    COMP: Try to fix the error about the member functions not declared in the class header while running gccxml.
    COMP: Fix compiler warning about double semicolon.
    COMP: Comment the declaration of GetNextUserCellId - it is not implemented.

Code/Common/itkCellInterface

Code/Common/itkCenteredTransformInitializer

Code/Common/itkCenteredTransformInitializer

Code/Common/itkCenteredVersorTransformInitializer

Code/Common/itkCenteredVersorTransformInitializer

Code/Common/itkCorrespondingMedialNodeClique
    COMP: internal variables were not initialized (it was generating warnings on gcc-4.4.0)

Code/Common/itkElasticBodySplineKernelTransform
    STYLE: Fix the warnings produced by doxygen during WrapITK build.

Code/Common/itkFixedArray
    ENH: Added copy constructor for ConstReverseIterator(const ReverseIterator&).
    BUG: Lack of a cast form ReverseIterator to ConstReverseIterator did not allow operator != comparision.

Code/Common/itkGaussianBlurImageFunction

Code/Common/itkGaussianDerivativeSpatialFunction
    STYLE: Changed raw numbers to use vnl's numeric constants

Code/Common/itkIdentityTransform

Code/Common/itkImage
    COMP: SizeValueType must be declared in itk::Image.

Code/Common/itkImage

Code/Common/itkImageBase

Code/Common/itkImageBase
    COMP: Don't use vxl_uint_64: it is broken on vc60. Remove the check for image size as well for no, as I can't find a portable int 64 type..
    COMP: long long is not portable - using ITK_UINT64 instead.

Code/Common/itkImageFunction

Code/Common/itkImageRegion

Code/Common/itkImageRegion

Code/Common/itkImageRegionMultidimensionalSplitter
    BUG: 8524 Updated documentation to reflect required usage, note ImageRegionMultidimensionalSplitter is non-functional under many cases

Code/Common/itkImageRegionSplitter
    BUG: 8524 Updated documentation to reflect required usage, note ImageRegionMultidimensionalSplitter is non-functional under many cases

Code/Common/itkImageSliceConstIteratorWithIndex
    ENH: Added method to go to the first pixel of the current slice.

Code/Common/itkImageSliceConstIteratorWithIndex
    ENH: Added method to go to the first pixel of the current slice.

Code/Common/itkImageSource
    ENH: if Hessian and scales output are not requested, don't initialize the iterators to avoid an exception.  Post a warning if ImageSource's dynamic_cast fails to help others who may have abused the output

Code/Common/itkIndex
    ENH: Removed unnecessary ITK_USE_PORTABLE_ROUND cmake variable and added Floor and Ceil functions to itk::Math namespace

Code/Common/itkLineConstIterator

Code/Common/itkLinearInterpolateImageFunction
    ENH: Re-enable (and fix) optimized linear interpolation when ITK_USE_OPTIMIZED_REGISTRATION_METHODS is turned on

Code/Common/itkLinearInterpolateImageFunction
    ENH: Re-enable (and fix) optimized linear interpolation when ITK_USE_OPTIMIZED_REGISTRATION_METHODS is turned on

Code/Common/itkMacro
    ENH: Removed unnecessary ITK_USE_PORTABLE_ROUND cmake variable and added Floor and Ceil functions to itk::Math namespace

Code/Common/itkMersenneTwisterRandomVariateGenerator
    STYLE: Changed raw numbers to use vnl's numeric constants

Code/Common/itkMesh

Code/Common/itkMe

Code/Common/itkMetaDataObject
    STYLE: Fix missing parameters in docstrings

Code/Common/itkMultiThreader

Code/Common/itkNearestNeighborExtrapolateImageFunction
    BUG: changed to compare the clamping values from continuous index type to discrete, to revome extraineous int to double conversion
    BUG: Rounding should be performed before range check on index. Otherwise an index outside of range may be generated. This resulted in numercial exceptioons on Borland and probably produced unreliable results on other platforms.

Code/Common/itkNumericTraits
    STYLE: Doxygen thinks that <numeric_limits> is a html tags - drop the <> to fix the warning.

Code/Common/itkNumericTraitsRGBAPixel
    BUG: Use Self instead of RealType for the type returned by max(Self) and min(Self).

Code/Common/itkNumericTraitsRGBPixel
    BUG: Use Self instead of RealType for the type returned by max(Self) and min(Self).

Code/Common/itkNumericTraitsVariableLengthVectorPixel
    BUG: Use Self instead of RealType for the type returned by max(Self) and min(Self).

Code/Common/itkObjectFactoryBase
    COMP: cygwin crashing on dl_close().

Code/Common/itkPathConstIterator

Code/Common/itkPoint
    STYLE: parameter must be cited with the exact same in docstring - \alpha is not alpha.

Code/Common/itkPointSet

Code/Common/itkRGBAPixel
    BUG: Changed copy constructor to templated copy constuctor like all other ITK array type classes

Code/Common/itkRigid3DTransform
    STYLE: Fixed documentation about the parameters of AffineTransform and Rigid3DTransform. The first parameters are the matrix elements in row-major order an not column-major.

Code/Common/itkSimplexMesh

Code/Common/itkSimplexMe
    COMP: fix some uninitialized points. fix shadowed declaration.

Code/Common/itkTransform
    COMP: Masked unused param
    BUG: Work-around for visual 6 bug was used for all visual c++ version

Code/Common/itkTreeIteratorBase
    COMP: Fix build with explicit instantions activated.

Code/Common/itkTreeIteratorBase
    COMP: Fix build with explicit instantions activated.

Code/Common/itkVersor
    STYLE: Latex formulae must be enclosed in \f$ tags

Code/Common/itkVersorTransform
    STYLE: Fix the warnings produced by doxygen during WrapITK build.

Code/Common/itk_hashtable

Code/IO/itkBMPImageIO
    ENH: Removed unnecessary ITK_USE_PORTABLE_ROUND cmake variable and added Floor and Ceil functions to itk::Math namespace

Code/IO/itkConvertPixelBuffer

Code/IO/itkConvertPixelBuffer

Code/IO/itkDICOMSeriesFileNames

Code/IO/itkDICOMSeriesFileNames

Code/IO/itkGDCMImageIO

Code/IO/itkGE4ImageIO
    STYLE: Fix the warnings produced by doxygen during WrapITK build.

Code/IO/itkGE5ImageIO
    STYLE: Fix the warnings produced by doxygen during WrapITK build.

Code/IO/itkGEAdwImageIO
    STYLE: Fix the warnings produced by doxygen during WrapITK build.

Code/IO/itkImageFileReader

Code/IO/itkImageFileReader

    BUG: 9212 When reading a 3D file into a 2D image we must read the first slice. This is the fix to enable this reading by creating a temporary buffer and then copying a subregion into the image output's buffer. Also corrected the size of the temporary buffer for when streaming is occouring, by using the size of the IORegion.

Code/IO/itkImageFileWriter
    BUG: progress never reached 1.0, this fix does not result in a divide by zero
    BUG: progress never reached 1.0, off by one error on the denominator

Code/IO/itkImageIOBase
    BUG: 9212 When reading a 3D file into a 2D image we must read the first slice. Added ImageIORegion::GetNumberOfPixels methods, and change the member access control of ImageIOBase::GetComponentSize() from protected to public. This enables the calculation of the size of the ImageIORegion in bytes.

Code/IO/itkImageIORegion
    BUG: replaced unsigned long with size_t
    BUG: 9212 When reading a 3D file into a 2D image we must read the first slice. Added ImageIORegion::GetNumberOfPixels methods, and change the member access control of ImageIOBase::GetComponentSize() from protected to public. This enables the calculation of the size of the ImageIORegion in bytes.

Code/IO/itkImageIORegion
    BUG: 9212 When reading a 3D file into a 2D image we must read the first slice. Added ImageIORegion::GetNumberOfPixels methods, and change the member access control of ImageIOBase::GetComponentSize() from protected to public. This enables the calculation of the size of the ImageIORegion in bytes.

Code/IO/itkImageSeriesReader
    BUG: 9205 and 9149 Added checking when io dimension is greater than the templated dimension, enabled reading on a single ND file to an ND image, adding test to verify most combinations of input file dimensions to output image dimensions, enabled throwing of an exception when reading a series of ND+ files to an ND image

Code/IO/itkImageSeriesReader
    BUG: 9205 and 9149 Added checking when io dimension is greater than the templated dimension, enabled reading on a single ND file to an ND image, adding test to verify most combinations of input file dimensions to output image dimensions, enabled throwing of an exception when reading a series of ND+ files to an ND image

Code/IO/itkMetaImageIO
    BUG: When streaming MetaImage::ElementByteOrder would over run buffer, added parameter to tell the library the correct size of the buffer

Code/IO/itkMetaImageIO
    STYLE: Fix the warnings produced by doxygen during WrapITK build.

Code/IO/itkNiftiImageIO
    COMP: Fixed compiler error due to inconsistent const correctness.

Code/IO/itkSiemensVisionImageIO
    STYLE: Fix the warnings produced by doxygen during WrapITK build.

Code/IO/itkTIFFImageIO
    COMP: Oops. Added fix twice brainless.

Code/IO/itkTestDriver
    BUG: itkTestDriver must set both LD_LIBRARY_PATH and LD_LIBRARY_PATH_64 to avoid loading unwanted libraries with 64 bit programs.

Code/Numerics/itkAmoebaOptimizer
    BUG: 0009400. Cost function not set correctly in itkAmoebaOptimizer superclass.

Code/Numerics/itkAmoebaOptimizer
    ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Code/Numerics/itkCumulativeGaussianOptimizer
    STYLE: Changed raw numbers to use vnl's numeric constants

Code/Numerics/itkCumulativeGaussianOptimizer
    ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Code/Numerics/itkExhaustiveOptimizer
    ENH: Added GetStopConditionDescription().

Code/Numerics/itkExhaustiveOptimizer
    ENH: Added GetStopConditionDescription().

Code/Numerics/itkGradientDescentOptimizer
    ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Code/Numerics/itkGradientDescentOptimizer
    ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Code/Numerics/itkLBFGSBOptimizer
    ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Code/Numerics/itkLBFGSBOptimizer
    ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Code/Numerics/itkLBFGSOptimizer
    ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Code/Numerics/itkLBFGSOptimizer
    ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Code/Numerics/itkLevenbergMarquardtOptimizer
    ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Code/Numerics/itkLevenbergMarquardtOptimizer
    ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Code/Numerics/itkOnePlusOneEvolutionaryOptimizer
    ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Code/Numerics/itkOnePlusOneEvolutionaryOptimizer
    ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Code/Numerics/itkOptimizer
    ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Code/Numerics/itkOptimizer
    ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Code/Numerics/itkPowellOptimizer
    ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Code/Numerics/itkPowellOptimizer
    ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Code/Numerics/itkRegularStepGradientDescentBaseOptimizer
    ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Code/Numerics/itkRegularStepGradientDescentBaseOptimizer
    ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Code/Numerics/itkSPSAOptimizer
    ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Code/Numerics/itkSPSAOptimizer
    ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Code/Numerics/FEM/CMakeLists.txt
view.php?id=9527 .

Code/Numerics/Statistics/itkDenseFrequencyContainer

Code/Numerics/Statistics/itkGaussianDistribution
    STYLE: Changed raw numbers to use vnl's numeric constants

Code/Numerics/Statistics/itkListSampleToHistogramGenerator
    STYLE:  Fixed spelling errors.

Code/Numerics/Statistics/itkSparseFrequencyContainer
    COMP: Copy pasting is Evil !,     Evil I tell you...

Code/Review/itkAggregateLabelMapFilter
    STYLE: Adding reference to the Insight Journal paper.

Code/Review/itkAggregateLabelMapFilter

Code/Review/itkAnchorErodeDilateImageFilter
    STYLE: method names should begin with uppercase.

Code/Review/itkAnchorOpenCloseImageFilter
    STYLE: method names should begin with uppercase.

Code/Review/itkAreaOpeningImageFilter
    ENH: Adding reference to the Insight Journal paper.

Code/Review/itkAutoCropLabelMapFilter

Code/Review/itkAutoCropLabelMapFilter

Code/Review/itkBinaryImageToLabelMapFilter
    ENH: Replacing instances of evil "long" type with corresponding SizeValueType and OffsetValueType.

Code/Review/itkBinaryImageToLabelMapFilter
    STYLE: use this to call member functions
    BUG: Last change should have rermoved the NeighIdx >= 0 test completely.
    ENH: Replacing instances of evil "long" type with corresponding SizeValueType and OffsetValueType.
    COMP: VC6 doesn't have std::min. Replaced now with vnl_math_min().

Code/Review/itkBinaryImageToShapeLabelMapFilter
    STYLE: Line style modifications.

Code/Review/itkBinaryImageToShapeLabelMapFilter

Code/Review/itkBinaryImageToStatisticsLabelMapFilter
    COMP: warnings and style. itk:: prefix not required while inside itk namespace. typename not needed when templates are present in typedef.
584.

Code/Review/itkBinaryImageToStatisticsLabelMapFilter
584.

Code/Review/itkBinaryShapeKeepNObjectsImageFilter
    COMP: numerous Borland compiler issues. Many regarding default template parameters.
584.

Code/Review/itkBinaryShapeKeepNObjectsImageFilter

Code/Review/itkBinaryShapeOpeningImageFilter

    COMP: Issues with Borland compiler and default template  parameters.

Code/Review/itkBinaryShapeOpeningImageFilter

Code/Review/itkBinaryStatisticsKeepNObjectsImageFilter
    COMP: numerous Borland compiler issues. Many regarding default template parameters.
584.

Code/Review/itkBinaryStatisticsKeepNObjectsImageFilter
584.

Code/Review/itkBinaryStatisticsOpeningImageFilter
    COMP: Fix wrong image type. STYLE: Align typedefs.
584.

Code/Review/itkBinaryStatisticsOpeningImageFilter

Code/Review/itkBoxUtilities

Code/Review/itkBresenhamLine
    STYLE: method names should begin with uppercase.

Code/Review/itkBresenhamLine
    STYLE: method names should begin with uppercase.

Code/Review/itkChangeLabelLabelMapFilter
    ENH: Removing unnecessary declartions of TemplatedGenerateData().
    STYLE: Fixing misspelled method name: RestoreLabeObjectsAndChangeLabels().

Code/Review/itkChangeLabelLabelMapFilter
    STYLE: Fixing misspelled method name: RestoreLabeObjectsAndChangeLabels().
    COMP: On VS6, error C2899: typename cannot be used outside a template declaration

Code/Review/itkChangeRegionLabelMapFilter
    STYLE: Changes in formatting, remove debug outputs, grammar.

Code/Review/itkChangeRegionLabelMapFilter
    STYLE: Changes in formatting, remove debug outputs, grammar.

Code/Review/itkConformalFlatteningMeshFilter
    COMP: Use vcl_sqrt rather than sqrt to avoid  Error: The function "sqrt" must have a prototype on SunOS,

Code/Review/itkCropLabelMapFilter

Code/Review/itkCropLabelMapFilter

Code/Review/itkFFTWComplexToComplexImageFilter
    COMP: removed dummy PrintSelf's.

Code/Review/itkFFTWComplexToComplexImageFilter
    COMP: removed dummy PrintSelf's.

Code/Review/itkGeometricalQuadEdge
    COMP: Fix warnings in documentation of QuadEdgeMesh classes

Code/Review/itkGridForwardWarpImageFilter
    ENH: Removed unnecessary ITK_USE_PORTABLE_ROUND cmake variable and added Floor and Ceil functions to itk::Math namespace

Code/Review/itkHessianToObjectnessMeasureImageFilter
    BUG: fixed typo in documentation that caused Doxygen to create two entries in the class list.

Code/Review/itkInPlaceLabelMapFilter
    COMP: PrintSelfI() method was duplicated.

Code/Review/itkInPlaceLabelMapFilter
    COMP: PrintSelfI() method was duplicated.

Code/Review/itkLabelContourImageFilter
    ENH: Replace use of "long" with the proper types "SizeValueType" and "OffsetValueType".

Code/Review/itkLabelContourImageFilter
    BUG: Fix wrong boundary check introduced during the convertion of long to SizeValueType and OffsetValueType and the following warning fixes.
    COMP: warning: comparison of unsigned expression >= 0 is always true

Code/Review/itkLabelImageToLabelMapFilter
    STYLE: It was missing reference to the Insight Journal paper from which the code was taken.

Code/Review/itkLabelImageToShapeLabelMapFilter
    COMP: warnings and style. itk:: prefix not required while inside itk namespace. typename not needed when templates are present in typedef.
    COMP: Issues with Borland compiler and default template  parameters.

Code/Review/itkLabelImageToShapeLabelMapFilter
    ENH: Use method names consitent with LabelImageToLabelMapFilter.

Code/Review/itkLabelImageToStatisticsLabelMapFilter
    COMP: VS6 issue with using typename outside a template.
584.

Code/Review/itkLabelImageToStatisticsLabelMapFilter
584.

Code/Review/itkLabelMap
    ENH: Removing std::cout statements that were commented out.

Code/Review/itkLabelMapFilter
    COMP: Fix missing include

Code/Review/itkLabelMapFilter

Code/Review/itkLabelMapToBinaryImageFilter

Code/Review/itkLabelMapToBinaryImageFilter

Code/Review/itkLabelMapToLabelImageFilter
    STYLE: Concatenated some lines.

Code/Review/itkLabelObject
    COMP: enum -> StaticConstMacro
    STYLE: Doxygen expects the "\brief" description to end up in a ".".

Code/Review/itkLabelObject
    COMP: itk exceptions are preferred over runtime_error. Exception text made more descriptive.
    BUG: CopyAttributesFrom() failed to copt m_Label.

Code/Review/itkLabelObjectAccessors
    COMP: comparators need both a default constructor and a copy constructor to avoid uninitialized warnings.
    COMP: Fix warning: type qualifiers ignored on function return type with gcc 4.3.
    COMP: Fixed const-correctness of the operator() methods.

Code/Review/itkLabelObjectLine

Code/Review/itkLabelObjectLine

Code/Review/itkLabelOverlayFunctor
    STYLE: Fixed problem with comment.
    ENH: Let the user set its own colors. Patch provided by Martin Kavec.

Code/Review/itkLabelOverlayImageFilter
    ENH: Let the user set its own colors. Patch provided by Martin Kavec.

Code/Review/itkLabelOverlayImageFilter
    ENH: Let the user set its own colors. Patch provided by Martin Kavec.

Code/Review/itkLabelPerimeterEstimationCalculator

Code/Review/itkLabelPerimeterEstimationCalculator

Code/Review/itkLabelShapeKeepNObjectsImageFilter
    COMP: numerous Borland compiler issues. Many regarding default template parameters.
584.

Code/Review/itkLabelShapeKeepNObjectsImageFilter
584.

Code/Review/itkLabelShapeOpeningImageFilter
    COMP: numerous Borland compiler issues. Many regarding default template parameters.
584.

Code/Review/itkLabelShapeOpeningImageFilter
584.

Code/Review/itkLabelStatisticsKeepNObjectsImageFilter
    COMP: warnings and style. itk:: prefix not required while inside itk namespace. typename not needed when templates are present in typedef.
    COMP: Fix const correctness.

Code/Review/itkLabelStatisticsKeepNObjectsImageFilter
584.

Code/Review/itkLabelStatisticsOpeningImageFilter
    COMP: warnings and style. itk:: prefix not required while inside itk namespace. typename not needed when templates are present in typedef.
584.

Code/Review/itkLabelStatisticsOpeningImageFilter
584.

Code/Review/itkLabelToRGBFunctor
    ENH: Let the user set its own colors. Patch provided by Martin Kavec.

Code/Review/itkLabelToRGBImageFilter
    ENH: Let the user set its own colors. Patch provided by Martin Kavec.

Code/Review/itkLabelToRGBImageFilter
    ENH: Let the user set its own colors. Patch provided by Martin Kavec.

Code/Review/itkMaskedRankImageFilter
    STYLE: method names should begin with uppercase.

Code/Review/itkMaskedRankImageFilter
    STYLE: method names should begin with uppercase.

Code/Review/itkMergeLabelMapFilter
    STYLE: Edited style and spacing in header file.
    COMP: STRICT is defined on some systems (e.g. Borland). Must undef it before use in enum.

Code/Review/itkMergeLabelMapFilter

Code/Review/itkMovingHistogramImageFilter
    STYLE: method names should begin with uppercase.

Code/Review/itkMovingHistogramImageFilter
    STYLE: method names should begin with uppercase.

Code/Review/itkMovingHistogramMorphologicalGradientImageFilter
    STYLE: method names should begin with uppercase.

Code/Review/itkMovingHistogramMorphologyImageFilter
    STYLE: method names should begin with uppercase.

Code/Review/itkMultiScaleHessianBasedMeasureImageFilter
    ENH: if Hessian and scales output are not requested, don't initialize the iterators to avoid an exception.  Post a warning if ImageSource's dynamic_cast fails to help others who may have abused the output

Code/Review/itkMultiphaseDenseFiniteDifferenceImageFilter
    ENH: Pass TInputImage as template parameters to the parents class. Allows FeatureImage and OutputImage to be unsigned char. Reduces memory usage.

Code/Review/itkMultiphaseDenseFiniteDifferenceImageFilter
    ENH: Pass TInputImage as template parameters to the parents class. Allows FeatureImage and OutputImage to be unsigned char. Reduces memory usage.

Code/Review/itkMultiphaseFiniteDifferenceImageFilter
    ENH: Pass TInputImage as template parameters to the parents class. Allows FeatureImage and OutputImage to be unsigned char. Reduces memory usage.

Code/Review/itkMultiphaseFiniteDifferenceImageFilter
    ENH: Computing the RMS change values after reinitialization to signed distance functions
    ENH: Eliminated AllocateUpdateBuffer() method, simplified some code and added comments
    PERF: Corrected initialization statements in constructor and Removed redundant initialization statements

Code/Review/itkMultiphaseSparseFiniteDifferenceImageFilter
    ENH: Computing the RMS change values after reinitialization to signed distance functions
    ENH: Eliminated the usage of m_ShiftedImage. Reduces memory footprint.
    ENH: Updating non-sparse field layer pixels to get re-assigned to BackgroundValue
    STYLE: Made some simple changes including variable renaming and adding comments

Code/Review/itkMultiphaseSparseFiniteDifferenceImageFilter
    BUG: m_PixelDistance subscript out of bounds
    ENH: Comparison between unsigned char and double
    BUG: container issues. Accessing containers outside of their size.
    ENH: gradientMagnitude initialized but never used
    BUG: Sparse-field pixels being added multiple times to the lists. Added more code comments.
    ENH: Correct sparse initialization to take into account image spacing
    BUG: m_RMSChange being re-initialized to 0 in derived class constructor

Code/Review/itkOptImageToImageMetric
    BUG: Fixed a discrepency in the API of the optimized and standard image to image metric. This implies deprecating the use of volatile image masks.
    BUG: 0009398 removed boolean value that caused backwards compatibility issues.
    COMP: Used itkNotUsed to eliminate unused var (param) warnings
    STYLE: itkSingleValuedCostFunction.h was included twice
    BUG:0009139: Fixed a test that fails because the number of samples is internally reduced when the fixed image mask is smaller than the number of samples requested.  This leads to an inconsistent initialization of several variables.  The solution listed in bug 0009139 ensures that all internal arrays are re-initialized to the correct length if this internal reduction in samples occurs.

Code/Review/itkOptImageToImageMetr
    BUG: If user called "UseAllSamples" and then called "SetNumberOfSamples(N)" and passed a value for N that is less than the total number of pixels in the image, the metric would use the first N pixels (in order) from the image.  That is not expected behavior and has been changed to use random sampling if N is less than the total number of pixels in the image
    BUG: 0009398 removed boolean value that caused backwards compatibility issues.
    COMP: Removed debugging cout statements that were accidentally left-in
    BUG: SetNumberOfThreads must check to see if the multithreader accepts the number of threads. For example, on mingw, the maximum number of threads is 1.

Code/Review/itkOptLinearInterpolateImageFunction
    ENH: Re-enable (and fix) optimized linear interpolation when ITK_USE_OPTIMIZED_REGISTRATION_METHODS is turned on

Code/Review/itkOptLinearInterpolateImageFunction
    ENH: Re-enable (and fix) optimized linear interpolation when ITK_USE_OPTIMIZED_REGISTRATION_METHODS is turned on

Code/Review/itkOptMattesMutualInformationImageToImageMetric

Code/Review/itkOptMattesMutualInformationImageToImageMetr
    ENH: The test for samples mapping outside of the moving image buffer was too stringent. In the future a method will be added to set this parameter. For now, it is changed from 4 to 16 as suggested by Simon Warfield.

Code/Review/itkOptMeanSquaresImageToImageMetr
    BUG: If user called "UseAllSamples" and then called "SetNumberOfSamples(N)" and passed a value for N that is less than the total number of pixels in the image, the metric would use the first N pixels (in order) from the image.  That is not expected behavior and has been changed to use random sampling if N is less than the total number of pixels in the image

Code/Review/itkOptResampleImageFilter
    BUG: the input largest possible region should not be set in GenerateInputRequestedRegion, simplified methods to call SetRequestedRegionToLargestPossible

Code/Review/itkPadLabelMapFilter

Code/Review/itkPadLabelMapFilter

Code/Review/itkQuadEdge
    COMP: Fix warnings in documentation of QuadEdgeMesh classes

Code/Review/itkQuadEdgeCellTraitsInfo
    ENH: Provide some default values to make the wrapping easier.

Code/Review/itkQuadEdgeMesh
    COMP: Fix warnings in documentation of QuadEdgeMesh classes
    COMP: Hide the method which are exposing BoundaryAssignmentsContainer to avoid building that broken type. BoundaryAssignmentsContainer::Reserve() won't build with a non numeric type used as key type.

Code/Review/itkQuadEdgeMe

Code/Review/itkQuadEdgeMeshFrontIterator
    COMP: Add missing GetMesh()
    COMP: missing return this at the end of the method.

Code/Review/itkQuadEdgeMeshLineCell
    COMP: Drop the broken New() method

Code/Review/itkQuadEdgeMeshLineCell
    COMP: Drop the broken New() method

Code/Review/itkQuadEdgeMeshPoint
    COMP: Fix warnings in documentation of QuadEdgeMesh classes
    COMP: QuadEdgeMeshPoint is not limited to dimension 3.

Code/Review/itkQuadEdgeMeshScalarDataVTKPolyDataWriter

Code/Review/itkQuadEdgeMeshScalarDataVTKPolyDataWriter

Code/Review/itkQuadEdgeMeshToQuadEdgeMeshFilter

Code/Review/itkQuadEdgeMeshToQuadEdgeMeshFilter
    COMP: remove unnecessary ';' at the end of line 197

Code/Review/itkRankImageFilter
    STYLE: method names should begin with uppercase.

Code/Review/itkRankImageFilter
    STYLE: method names should begin with uppercase.

Code/Review/itkRegionBasedLevelSetFunction
    ENH: Added advection term to the update
    ENH: Corrected curvature regularization formula and reinitialization formula
    STYLE: Added documentation, reference and some notes
    STYLE: Added a few comments and deleted unnecessary lines

Code/Review/itkRegionBasedLevelSetFunction
    ENH: Included m_AdvectionChange update
    ENH: Added advection term to support geodesic active contours
    ENH: Used image spacing in computing derivatives
    STYLE: Added a few comments and deleted unnecessary lines

Code/Review/itkRegionBasedLevelSetFunctionData
    STYLE: Added a few comments and deleted unnecessary lines

Code/Review/itkRegionBasedLevelSetFunctionData

Code/Review/itkRegionFromReferenceLabelMapFilter
    COMP: Addressing compilation error in Borland, regarding use of ImageDimension without the itkGetStaticConstMacro().

Code/Review/itkRegionFromReferenceLabelMapFilter

Code/Review/itkRelabelLabelMapFilter
    COMP: shadowed type warning for LabelObjectContainerType.

Code/Review/itkRelabelLabelMapFilter
    COMP: shadowed type warning for LabelObjectContainerType.

Code/Review/itkScalarChanAndVeseDenseLevelSetImageFilter
    ENH: Pass TInputImage as template parameters to the parents class. Allows FeatureImage and OutputImage to be unsigned char. Reduces memory usage.

Code/Review/itkScalarChanAndVeseDenseLevelSetImageFilter
    ENH: Added advection term to the update
    STYLE: Made some simple changes including variable renaming and adding comments

Code/Review/itkScalarChanAndVeseLevelSetFunction
    STYLE: Added documentation, reference and some notes

Code/Review/itkScalarChanAndVeseLevelSetFunction
    STYLE: Added documentation, reference and some notes
    BUG: Corrected formula for computing product term in ComputeOverlapTerms()
    BUG: in the foreground constant calculation.

Code/Review/itkScalarChanAndVeseSparseLevelSetImageFilter
    ENH: Pass TInputImage as template parameters to the parents class. Allows FeatureImage and OutputImage to be unsigned char. Reduces memory usage.
    STYLE: Made some simple changes including variable renaming and adding comments

Code/Review/itkScalarChanAndVeseSparseLevelSetImageFilter
    ENH: Added advection term to the update
    BUG: Sparse-field pixels being added multiple times to the lists. Added more code comments.
    STYLE: fix inconsistency in the template argument name as mentionned by Sgouritsa Eleni.

Code/Review/itkScalarRegionBasedLevelSetFunction
    STYLE: Added documentation, reference and some notes

Code/Review/itkScalarRegionBasedLevelSetFunction
    BUG: Sparse-field pixels being added multiple times to the lists. Added more code comments.
    STYLE: Added documentation, reference and some notes
    BUG: Corrected formula for computing product term in ComputeOverlapTerms()

Code/Review/itkScaleVersor3DTransform

Code/Review/itkScaleVersor3DTransform

Code/Review/itkShapeKeepNObjectsLabelMapFilter
    COMP: shadowed variable warnings resolved.

Code/Review/itkShapeKeepNObjectsLabelMapFilter

Code/Review/itkShapeLabelMapFilter
    COMP: warnings and style. itk:: prefix not required while inside itk namespace. typename not needed when templates are present in typedef.
    STYLE: Several style issues. Member functions should start with upper case. Utility functions moved to private area. Reformatted comments to fit lines. PI replaced with vnl_math::pi.

Code/Review/itkShapeLabelMapFilter
    STYLE: Several style issues. Member functions should start with upper case. Utility functions moved to private area. Reformatted comments to fit lines. PI replaced with vnl_math::pi.
    COMP: std::min and std::max are not present on all itk supported compilers. Use vnl_math_min() and vnl_math_max() instead.

Code/Review/itkShapeLabelObject
    COMP: warnings and style. itk:: prefix not required while inside itk namespace. typename not needed when templates are present in typedef.
    COMP:   static const AttributeType BINARY_FLATNESS=117 is not portable across ITK supported comppilers. Instead use itkStaticConstMacro(BINARY_FLATNESS, AttributeType, 117).

Code/Review/itkShapeLabelObjectAccessors
    COMP: Fix warning: type qualifiers ignored on function return type with gcc 4.3.
    ENH: Missing accessor for Region added.

Code/Review/itkShapeOpeningLabelMapFilter
    COMP: LabelObjectType definition shadowed the same one in this.

Code/Review/itkShapeOpeningLabelMapFilter
    COMP: It was missing the ShapeLabelObjectAccessors header.

Code/Review/itkShapeRelabelImageFilter
    COMP: numerous Borland compiler issues. Many regarding default template parameters.
584.

Code/Review/itkShapeRelabelImageFilter
584.

Code/Review/itkShapeRelabelLabelMapFilter
    COMP: shadowed variable warnings.
    COMP: Fixing typename issue in VS60.
    STYLE: Adjusted indents for variables.

Code/Review/itkShapeRelabelLabelMapFilter

Code/Review/itkShapeUniqueLabelMapFilter
    COMP: warnings and style. itk:: prefix not required while inside itk namespace. typename not needed when templates are present in typedef.
    COMP: Fix wrong type used - AttributeType instead of AttributeValueType.
584.

Code/Review/itkShapeUniqueLabelMapFilter
584.

Code/Review/itkShiftScaleLabelMapFilter
    ENH: Removing unnecessary declartions of TemplatedGenerateData().
    COMP: shadowed type warning for LabelObjectContainerType.

Code/Review/itkShiftScaleLabelMapFilter
    COMP: shadowed type warning for LabelObjectContainerType.

Code/Review/itkSinRegularizedHeavisideStepFunction
    PERF: Corrected the if statement operator from > to >=

Code/Review/itkSliceBySliceImageFilter
    ENH: There's no need to know the input type of the output filter, so use ImageSource as output filter type.

Code/Review/itkStatisticsKeepNObjectsLabelMapFilter
    COMP: Accessors should be included there.

Code/Review/itkStatisticsKeepNObjectsLabelMapFilter
584.

Code/Review/itkStatisticsLabelMapFilter
    COMP: numerous Borland compiler issues. Many regarding default template parameters.

Code/Review/itkStatisticsLabelMapFilter
    BUG: for the new statistics framework, you MUST set the size of the measurement vector.
    ENH: Added code to work with new statistics classes.

Code/Review/itkStatisticsLabelObject
    COMP: numerous Borland compiler issues. Many regarding default template parameters.

Code/Review/itkStatisticsLabelObjectAccessors
    COMP: Fix warning: type qualifiers ignored on function return type with gcc 4.3.
    COMP: Accessors functions must be const.

Code/Review/itkStatisticsOpeningLabelMapFilter
    COMP: Accessors should be included there.

Code/Review/itkStatisticsOpeningLabelMapFilter
584.

Code/Review/itkStatisticsRelabelImageFilter
    COMP: warnings and style. itk:: prefix not required while inside itk namespace. typename not needed when templates are present in typedef.
584.

Code/Review/itkStatisticsRelabelImageFilter
584.

Code/Review/itkStatisticsRelabelLabelMapFilter
    COMP: Accessors should be included there.

Code/Review/itkStatisticsRelabelLabelMapFilter
584.

Code/Review/itkStatisticsUniqueLabelMapFilter
584.

Code/Review/itkStatisticsUniqueLabelMapFilter
584.

Code/Review/itkTransformFileWriterWithFactory
    BUG: Append Mode wasn't being propogated to the TransformIO classes

Code/Review/itkVTKPolyDataReader
    ENH: Better error checking. If EOF is reached after POINT_DATA keyword, an exception is thrown.

Code/Review/itkVanHerkGilWermanErodeDilateImageFilter
    STYLE: method names should begin with uppercase.

Code/Review/Statistics/CMakeLists.txt

Code/Review/Statistics/itkChiSquareDistribution
    COMP: Use vcl_ versions of pow, sqrt, log and exp to fix build with sun studio

Code/Review/Statistics/itkGaussianDistribution
    COMP: Use vcl_ versions of pow, sqrt, log and exp to fix build with sun studio

Code/Review/Statistics/itkGaussianMembershipFunction
    COMP: Use vcl_ versions of pqrt, nd  fabsto fix build with sun studio

Code/Review/Statistics/itkImageClassifierFilter
    BUG: wrong Superclass or itkTypeMacro superclass.

Code/Review/Statistics/itkImageToHistogramFilter
    BUG: 6840 Adding test which runs ImageFileReader::DoConvertBuffer with the number of pixel > INT_MAX

Code/Review/Statistics/itkKdTreeBasedKmeansEstimator
    BUG: wrong Superclass or itkTypeMacro superclass.

Code/Review/Statistics/itkManhattanDistanceMetr
    COMP: Use vcl_ versions of pqrt, nd  fabsto fix build with sun studio

Code/Review/Statistics/itkMaximumDecisionRule2
    BUG: wrong Superclass or itkTypeMacro superclass.

Code/Review/Statistics/itkMeasurementVectorTraits

Code/Review/Statistics/itkMinimumDecisionRule2
    BUG: wrong Superclass or itkTypeMacro superclass.

Code/Review/Statistics/itkScalarImageToHistogramGenerator

Code/Review/Statistics/itkScalarImageToHistogramGenerator
    COMP: accomodate some API drift in the Review directory

Code/Review/Statistics/itkScalarImageToTextureFeaturesFilter
    BUG: wrong Superclass or itkTypeMacro superclass.

Code/Review/Statistics/itkSubsample
    BUG: wrong Superclass or itkTypeMacro superclass.

Code/Review/Statistics/itkTDistribution
    COMP: Use vcl_ versions of pow, sqrt, log and exp to fix build with sun studio

Documentation/Doxygen/DoxygenStyle.css

Examples/CMakeLists.txt
    ENH: added examples for chan and vesse in the not-empty-anymore Review Subdir.

Examples/Filtering/CMakeLists.txt
    COMP: ResampleImageFilter7Test  --compareNumberOfPixelsTolerance 1
    BUG: 6558. Fix to CMakeLists.txt addresses failing test ResampleImageFilter3Test1. Mistype of regression data for pixel-centered coordinates case.

Examples/Filtering/GrayscaleFunctionDilateImageFilter
    ENH: Adding an example on the user of the itkGrayscaleFunctionDilateImageFilter.

Examples/IO/CMakeLists.txt
    ENH: enabled the VisibleHuman IO examples to be tests

Examples/IO/DicomSeriesReadGaussianImageWrite

Examples/IO/IOExamples
    ENH: enabled the VisibleHuman IO examples to be tests

Examples/IO/ImageReadExtractFilterInsertWrite

Examples/IO/VisibleHumanPasteWrite
    ENH: enabled the VisibleHuman IO examples to be tests
    COMP: fixed unused parameter compiler warning

Examples/IO/VisibleHumanStreamReadWrite
    ENH: enabled the VisibleHuman IO examples to be tests
    ENH: adding examples for IO streaming VisibleHumanStreamReadWrite.cxx: This illustrates how to read the Visible Male, and how to use IO streaming to process a 16GB data set using only 50MB of memory. VisibleHumanPasteWrite.cxx: Which primarily show how to utilized pasting streaming to an output image. Also added another CMake variable will be need to point to this data: ITK_VISIBLEHUMAN_DATA_ROOT

Examples/Iterators/ImageRegionIterator
    ENH: Replacing overcrowded "for" loop with a clearer verbose "while" loop.

Examples/Registration/CMakeLists.txt
    COMP: For ImageRegistration12Test, increase pixel compare tolerance to 2. Needed after bug fix to optimized metric.

Examples/Registration/DeformableRegistration12
    ENH: Added GetStopConditionDescription().

Examples/Registration/DeformableRegistration13
    ENH: Added GetStopConditionDescription().

Examples/Registration/DeformableRegistration14
    ENH: Added GetStopConditionDescription().

Examples/Registration/DeformableRegistration15
    ENH: Added GetStopConditionDescription().

Examples/Registration/DeformableRegistration4
    ENH: Added GetStopConditionDescription().

Examples/Registration/DeformableRegistration6
    ENH: Added GetStopConditionDescription().

Examples/Registration/DeformableRegistration7
    ENH: Added GetStopConditionDescription().

Examples/Registration/DeformableRegistration8
    ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration10
    ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration11
    ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration12
    ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration13
    ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration14
    ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration15
    ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration16
    ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration17
    ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration18
    ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration2
    ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration2o
    ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration3
    ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration3o
    ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration4
    ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration4o
    ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration5
    ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration5o
    ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration6
    ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration6o
    ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration7
    ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration7o
    ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration8
    ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration9
    ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistrationHistogramPlotter
    ENH: Added GetStopConditionDescription().

Examples/Registration/ModelToImageRegistration1
    ENH: Added GetStopConditionDescription().

Examples/Registration/ModelToImageRegistration2
    ENH: Added GetStopConditionDescription().

Examples/Registration/MultiResImageRegistration1
    ENH: Added GetStopConditionDescription().

Examples/Registration/MultiResImageRegistration2
    ENH: Added GetStopConditionDescription().

Examples/Registration/MultiResImageRegistration3
    ENH: Added GetStopConditionDescription().

Examples/Review/CMakeLists.txt
    ENH: added examples for chan and vesse in the not-empty-anymore Review Subdir. Tested under Mac, see corresponding experimental submission.

Examples/Review/itkScalarSinglePhaseDense2DTest
    ENH: added examples for chan and vesse in the not-empty-anymore Review Subdir. Tested under Mac, see corresponding experimental submission.

Examples/Review/itkScalarSinglePhaseSparse2DTest
    ENH: added examples for chan and vesse in the not-empty-anymore Review Subdir. Tested under Mac, see corresponding experimental submission.

Examples/Segmentation/ThresholdSegmentationLevelSetImageFilter

Examples/SpatialObjects/SpatialObjectToImageStatisticsCalculator

Examples/Statistics/ImageToListAdaptor

Testing/Code/Algorithms/CMakeLists.txt

Testing/Code/Algorithms/itkCompareHistogramImageToImageMetricTest

Testing/Code/Algorithms/itkCorrelationCoefficientHistogramImageToImageMetricTest

Testing/Code/Algorithms/itkCurvatureFlowTest

Testing/Code/Algorithms/itkCurvatureRegistrationFilterTest

Testing/Code/Algorithms/itkDemonsRegistrationFilterTest

Testing/Code/Algorithms/itkFEMRegistrationFilterTest

Testing/Code/Algorithms/itkFFTTest

Testing/Code/Algorithms/itkGradientDifferenceImageToImageMetricTest

Testing/Code/Algorithms/itkHistogramImageToImageMetricTest

Testing/Code/Algorithms/itkImageRegistrationMethodTest_13
    COMP: Adjust parameters to get a portable solution.

Testing/Code/Algorithms/itkMIRegistrationFunctionTest

Testing/Code/Algorithms/itkMattesMutualInformationImageToImageMetricTest
    BUG: Fixed a discrepency in the API of the optimized and standard image to image metric. This implies deprecating the use of volatile image masks.
    BUG:0009139: Added a test that fails because the number of samples is internally reduced when the fixed image mask is smaller than the number of samples requested.  This leads to an inconsistent initialization of several variables.  The solution listed in bug 0009139 ensures that all internal arrays are re-initialized to the correct length if this internal reduction in samples occurs.
    BUG: GetNumberOfMovingImageSamples() is only available if  ITK_USE_OPTIMIZED_REGISTRATION_METHODS is defined.

Testing/Code/Algorithms/itkMeanReciprocalSquareDifferenceImageMetricTest

Testing/Code/Algorithms/itkMeanReciprocalSquareDifferencePointSetToImageMetricTest

Testing/Code/Algorithms/itkMeanSquaresHistogramImageToImageMetricTest

Testing/Code/Algorithms/itkMeanSquaresImageMetricTest

Testing/Code/Algorithms/itkMeanSquaresPointSetToImageMetricTest

Testing/Code/Algorithms/itkMultiResolutionPDEDeformableRegistrationTest
    BUG: Pyramid should use ShrinkimageFilter.

Testing/Code/Algorithms/itkMutualInformationHistogramImageToImageMetricTest

Testing/Code/Algorithms/itkNormalizedCorrelationImageMetricTest

Testing/Code/Algorithms/itkNormalizedCorrelationPointSetToImageMetricTest

Testing/Code/Algorithms/itkNormalizedMutualInformationHistogramImageToImageMetricTest

Testing/Code/Algorithms/itkRegularSphereMeshSourceTest
    COMP: fix some unitialized points which create a warning with gcc-4.4.0

Testing/Code/Algorithms/itkSymmetricForcesDemonsRegistrationFilterTest

Testing/Code/BasicFilters/CMakeLists.txt
    BUG: 9431 adding test for the canny edge filter which runs the filter multiple times and expects the same output
    BUG: itkStreamingImageFilterTest3_2 was refering to the wrong test image

Testing/Code/BasicFilters/itkBSplineDecompositionImageFilterTest

Testing/Code/BasicFilters/itkBSplineResampleImageFunctionTest

Testing/Code/BasicFilters/itkBasicFiltersTests
    BUG: 9431 adding test for the canny edge filter which runs the filter multiple times and expects the same output

Testing/Code/BasicFilters/itkBasicFiltersTests2
    BUG: 8524 adding test to reproduce, this test illustrates problems with itkImageRegionMultidimensionalSplitter, specifically GetNumberOfSplits not returning the correct value add the latter splitting not being performed with the same number of splits

Testing/Code/BasicFilters/itkBinaryMedianImageFilterTest

Testing/Code/BasicFilters/itkBinaryThresholdImageFilterTest

Testing/Code/BasicFilters/itkBloxBoundaryPointImageTest

Testing/Code/BasicFilters/itkBloxBoundaryPointImageToBloxBoundaryProfileImageFilterTest

Testing/Code/BasicFilters/itkBloxBoundaryProfileImageToBloxCoreAtomImageFilterTest

Testing/Code/BasicFilters/itkBloxCoreAtomTest

Testing/Code/BasicFilters/itkCannyEdgeDetectionImageFilterTest2
    BUG: 9431 adding test for the canny edge filter which runs the filter multiple times and expects the same output

Testing/Code/BasicFilters/itkChangeLabelImageFilterTest

Testing/Code/BasicFilters/itkCheckerBoardImageFilterTest
    ENH: reduced output of test.

Testing/Code/BasicFilters/itkConstantPadImageTest

Testing/Code/BasicFilters/itkDifferenceOfGaussiansGradientTest

Testing/Code/BasicFilters/itkFlipImageFilterTest
    ENH: Removed unnecessary ITK_USE_PORTABLE_ROUND cmake variable and added Floor and Ceil functions to itk::Math namespace

Testing/Code/BasicFilters/itkFloodFillIteratorTest

Testing/Code/BasicFilters/itkGaussianImageSourceTest

Testing/Code/BasicFilters/itkHMaximaMinimaImageFilterTest
    ENH: Changed test so that HMaxima and HMinima have input image types that differ from the output image types.

Testing/Code/BasicFilters/itkImportImageTest
    BUG: 6558. Correct previous commit, which had a mistype in ITK_USE_CENTERED_PIXEL_COORDINATES_CONSISTENTLY off section.

Testing/Code/BasicFilters/itkIntensityWindowingImageFilterTest

Testing/Code/BasicFilters/itkInterpolateImagePointsFilterTest

Testing/Code/BasicFilters/itkMeanImageFilterTest

Testing/Code/BasicFilters/itkMedianImageFilterTest

Testing/Code/BasicFilters/itkMirrorPadImageTest

Testing/Code/BasicFilters/itkNarrowBandImageFilterBaseTest

Testing/Code/BasicFilters/itkNormalizeImageFilterTest

Testing/Code/BasicFilters/itkReleaseDataFilterTest

Testing/Code/BasicFilters/itkRescaleIntensityImageFilterTest

Testing/Code/BasicFilters/itkShiftScaleImageFilterTest

Testing/Code/BasicFilters/itkShiftScaleInPlaceImageFilterTest

Testing/Code/BasicFilters/itkShrinkImagePreserveObjectPhysicalLocations

Testing/Code/BasicFilters/itkSpatialFunctionImageEvaluatorFilterTest

Testing/Code/BasicFilters/itkStatisticsImageFilterTest

Testing/Code/BasicFilters/itkStreamingImageFilterTest2
    STYLE: 6558. Commented out section, mistakenly left in, taken out completely.

Testing/Code/BasicFilters/itkStreamingImageFilterTest3
    BUG: 8524 adding test to reproduce, this test illustrates problems with itkImageRegionMultidimensionalSplitter, specifically GetNumberOfSplits not returning the correct value add the latter splitting not being performed with the same number of splits

Testing/Code/BasicFilters/itkThresholdImageFilterTest

Testing/Code/BasicFilters/itkTwoOutputExampleImageFilterTest

Testing/Code/BasicFilters/itkVotingBinaryHoleFillingImageFilterTest

Testing/Code/BasicFilters/itkVotingBinaryImageFilterTest

Testing/Code/BasicFilters/itkVotingBinaryIterativeHoleFillingImageFilterTest

Testing/Code/BasicFilters/itkWarpImageFilterTest
    COMP:  Removed compiler warnings.
    COMP: unused parameter warnings,

Testing/Code/BasicFilters/itkWarpVectorImageFilterTest
    COMP:  Removed compiler warnings.
    BUG: 6558. Previous commit had a build warning. Now taken care of.

Testing/Code/BasicFilters/itkWrapPadImageTest

Testing/Code/Common/CMakeLists.txt
    ENH: Added a unit test for portable rounding functions

Testing/Code/Common/itkBSplineInterpolationWeightFunctionTest

Testing/Code/Common/itkCenteredVersorTransformInitializerTest
    ENH: Updating the test, now that we actually compute the rotation from the image moments.

Testing/Code/Common/itkCommonTests2
    ENH: Added a unit test for portable rounding functions

Testing/Code/Common/itkFixedArrayTest
    ENH: cover the reverse iteartors.
    ENH: Added tests for reverse iterators.

Testing/Code/Common/itkFloodFilledSpatialFunctionTest

Testing/Code/Common/itkImageFillBufferTest
    COMP: Don't use vxl_uint_64: it is broken on vc60. Remove the check for image size as well for no, as I can't find a portable int 64 type..
    COMP: long long is not portable - using ITK_UINT64 instead.

Testing/Code/Common/itkMathRoundProfileTest1
    BUG: 6558. New itkMathRoundProfileTest1.cxx that accounts for changes in rounding due to  ITK_USE_PORTABLE_ROUND flag.

Testing/Code/Common/itkMathRoundTest
    STYLE: Some debug information that was printed out in MathRoundTest was wrong. The test itself is not changed.
    ENH: Added a unit test for portable rounding functions

Testing/Code/Common/itkMatrixTest
    ENH: change matrix inverse calculation from float to double.

Testing/Code/Common/itkMedialNodeCorrespondencesTest
    BUG: correctDistance(7,7) was undefined.

Testing/Code/Common/itkNearestNeighborExtrapolateImageFunctionTest
    ENH: Removed unnecessary ITK_USE_PORTABLE_ROUND cmake variable and added Floor and Ceil functions to itk::Math namespace

Testing/Code/Common/itkSplineKernelTransformTest
    ENH: Added VolumeSplineKernelTransform to test.

Testing/Code/IO/CMakeLists.txt
    BUG: 6840 Adding test which runs ImageFileReader::DoConvertBuffer with the number of pixel > INT_MAX
    BUG: 9205 and 9149 Added checking when io dimension is greater than the templated dimension, enabled reading on a single ND file to an ND image, adding test to verify most combinations of input file dimensions to output image dimensions, enabled throwing of an exception when reading a series of ND+ files to an ND image
    ENH: Add a test for itk IO plugins. This plugin illustrates an ImageIO that does not have a physical file. The "file" is genearted form a text description.
    ENH: new test for 16 bit signed 3D tiff.

Testing/Code/IO/itkDICOMImageSeriesTest
    STYLE: Fixing coding style: brackets location.

Testing/Code/IO/itkDICOMImageSeriesTest2

Testing/Code/IO/itkFileFreeImageIO
    COMP: stdlib.h seems to be a better option to get atoi and atof than cstdlib - I'm not sure why...
    COMP: Need to incllude cstdlib to access atoi and atof on some platforms (e.g. Sun CC).

Testing/Code/IO/itkFileFreeImageIO
    ENH: Add a test for itk IO plugins. This plugin illustrates an ImageIO that does not have a physical file. The "file" is genearted form a text description.

Testing/Code/IO/itkFileFreeImageIOFactory
    ENH: Add a test for itk IO plugins. This plugin illustrates an ImageIO that does not have a physical file. The "file" is genearted form a text description.

Testing/Code/IO/itkFileFreeImageIOFactory
    ENH: Add a test for itk IO plugins. This plugin illustrates an ImageIO that does not have a physical file. The "file" is genearted form a text description.

Testing/Code/IO/itkIOPluginTest
    ENH: Add a test for itk IO plugins. This plugin illustrates an ImageIO that does not have a physical file. The "file" is genearted form a text description.

Testing/Code/IO/itkIOTests
    BUG: 6840 Adding test which runs ImageFileReader::DoConvertBuffer with the number of pixel > INT_MAX
    ENH: Add a test for itk IO plugins. This plugin illustrates an ImageIO that does not have a physical file. The "file" is genearted form a text description.

Testing/Code/IO/itkImageFileReaderDimensionsTest
    STYLE: renamed name of cxx file to match name of test - completed commit

Testing/Code/IO/Attic/itkImageFileReaderTest2
    STYLE: renamed name of cxx file to match name of test

Testing/Code/IO/itkImageSeriesReaderDimensionsTest
    BUG: 9205 and 9149 Added checking when io dimension is greater than the templated dimension, enabled reading on a single ND file to an ND image, adding test to verify most combinations of input file dimensions to output image dimensions, enabled throwing of an exception when reading a series of ND+ files to an ND image

Testing/Code/IO/itkLargeImageWriteConvertReadTest
    BUG: 6840 Adding test which runs ImageFileReader::DoConvertBuffer with the number of pixel > INT_MAX

Testing/Code/IO/itkLargeImageWriteReadTest

Testing/Code/IO/itkNrrdImageIOTest

Testing/Code/IO/itkPipelineMonitorImageFilter
    ENH: improved warning messaged when streaming does not execute as expected

Testing/Code/IO/itkRawImageIOTest

Testing/Code/IO/itkStimulateImageIOTest

Testing/Code/IO/itkTIFFImageIOTest
    ENH: Refactored TIFFImageIOTest.

Testing/Code/IO/itkVTKImageIOTest

Testing/Code/Numerics/itkAmoebaOptimizerTest
    BUG: 0009400. Cost function not set correctly in itkAmoebaOptimizer superclass.

Testing/Code/Numerics/itkConjugateGradientOptimizerTest
    ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Testing/Code/Numerics/itkCumulativeGaussianOptimizerTest
    ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Testing/Code/Numerics/itkFRPROptimizerTest
    BUG: Due to an early return EXIT_SUCCESS, the Polake Ribiere test was never performed

Testing/Code/Numerics/itkGradientDescentOptimizerTest
    ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Testing/Code/Numerics/itkLBFGSBOptimizerTest
    ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Testing/Code/Numerics/itkLBFGSOptimizerTest
    ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Testing/Code/Numerics/itkLevenbergMarquardtOptimizerTest
    ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Testing/Code/Numerics/itkSPSAOptimizerTest
    ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Testing/Code/Numerics/Statistics/CMakeLists.txt
    BUG: 6558. New regression data & CMakeLists.txt for pixel-centered coordinates, for failing test itkSampleSelectiveMeanShiftBlurringFilterTest.

Testing/Code/Numerics/Statistics/itkImageToListAdaptorTest

Testing/Code/Numerics/Statistics/itkMembershipSampleTest

Testing/Code/Numerics/Statistics/itkScalarImageToHistogramGeneratorTest
    STYLE: Improving formating.

Testing/Code/Numerics/Statistics/itkSubsampleTest

Testing/Code/Review/CMakeLists.txt
    COMP: On Borland do not build or run itkReviewTests4. These tests currently cause the following linker failure on Borland. Fatal: illegal VIRDEF fixup index in module. If this issue is resolved, this restriction will be removed.
    COMP: Moving tests that have Borland linker issues into their own test driver.
584.
584.
584.
584.
584.
584.
584.
584.
    COMP: Attribute cannot compare to bool.
    BUG: Fixing the input of the itkLabelImageToShapeLabelMapFilterTest1.
    BUG: Adding missing command line arguments  to the itkBinaryImageToShapeLabelMapFilterTest1.
    ENH: Adding more test for itkMergeLabelMapFilter.h
    ENH: Selecting a more interesting region for the ChangeRegionLabelMap filter test.
    ENH: Adding the input image background as a command line argument.
    BUG: Fixed usage of ChangeBackgroundValue and clarified its use as a boolean.
    ENH: Adding verbose command line option to the Mattes MI multi-threads test.

Testing/Code/Review/itkAddConstantToImageFilterTest
    COMP: Cover operator == and !=.

Testing/Code/Review/itkAggregateLabelMapFilterTest
    ENH: Introducing return and try-exception macros.

Testing/Code/Review/itkAutoCropLabelMapFilterTest1
    ENH: Increase code coverage.
    ENH: Improving code coverage.
    ENH: Adding the input image background as a command line argument.
    COMP: Renaming incorrect test filename itkAutoCropMapFilterTest1 to itkAutoCropLabelMapFilterTest1.

Testing/Code/Review/Attic/itkAutoCropMapFilterTest1
    COMP: Renaming incorrect test filename itkAutoCropMapFilterTest1 to itkAutoCropLabelMapFilterTest1.

Testing/Code/Review/itkBinaryImageToLabelMapFilterTest
    STYLE: Return should use the EXIT_SUCCESS macro.

Testing/Code/Review/itkBinaryImageToShapeLabelMapFilterTest1
    ENH: Add a couple of filter watchers.
    ENH: Better error message formatting.

Testing/Code/Review/itkBinaryImageToStatisticsLabelMapFilterTest1

Testing/Code/Review/itkBinaryShapeKeepNObjectsImageFilterTest1
    COMP: warning converting double to unsigned int.
584.

Testing/Code/Review/itkBinaryShapeOpeningImageFilterTest1

Testing/Code/Review/itkBinaryStatisticsKeepNObjectsImageFilterTest1
    COMP: warning converting double to unsigned int.

Testing/Code/Review/itkBinaryStatisticsOpeningImageFilterTest1

Testing/Code/Review/itkBoxMeanImageFilterTest
    COMP: remove warnings invalid multibyte character sequence

Testing/Code/Review/itkBoxSigmaImageFilterTest
    COMP: remove warnings invalid multibyte character sequence

Testing/Code/Review/itkChangeLabelLabelMapFilterTest

Testing/Code/Review/itkChangeRegionLabelMapFilterTest1
    BUG: Included logic for expect exception test.
    ENH: Improving code coverage.

Testing/Code/Review/itkCropLabelMapFilterTest1
    ENH: Adding test code coverage.
    ENH: Improving code coverage.

Testing/Code/Review/itkDiffeomorphicDemonsRegistrationFilterTest

Testing/Code/Review/itkDivideByConstantImageFilterTest
    COMP: Cover operator == and !=.

Testing/Code/Review/itkFastApproximateRankImageFilterTest
    COMP: remove warnings invalid multibyte character sequence

Testing/Code/Review/itkFastSymmetricForcesDemonsRegistrationFilterTest

Testing/Code/Review/itkKappaSigmaThresholdImageCalculatorTest
    BUG: mask should be unsigned char.

Testing/Code/Review/itkLabelContourImageFilterTest
    ENH: Better coverage.

Testing/Code/Review/itkLabelImageToShapeLabelMapFilterTest1
    ENH: Use method names consitent with LabelImageToLabelMapFilter.

Testing/Code/Review/itkLabelImageToStatisticsLabelMapFilterTest1

Testing/Code/Review/itkLabelMapToBinaryImageFilterTest

Testing/Code/Review/itkLabelObjectTest
    COMP: Fixed unsigned and signed int comparison warning.

Testing/Code/Review/itkLabelOverlayImageFilterTest
    ENH: Let the user set its own colors. Patch provided by Martin Kavec.

Testing/Code/Review/itkLabelShapeKeepNObjectsImageFilterTest1
    COMP: warning converting double to unsigned int.

Testing/Code/Review/itkLabelShapeOpeningImageFilterTest1
584.

Testing/Code/Review/itkLabelStatisticsKeepNObjectsImageFilterTest1
    COMP: warning converting double to unsigned int.

Testing/Code/Review/itkLabelStatisticsOpeningImageFilterTest1
584.

Testing/Code/Review/itkLabelToRGBImageFilterTest
    ENH: Let the user set its own colors. Patch provided by Martin Kavec.

Testing/Code/Review/itkMapMaskedRankImageFilterTest
    COMP: remove warnings invalid multibyte character sequence

Testing/Code/Review/itkMapRankImageFilterTest
    COMP: remove warnings invalid multibyte character sequence

Testing/Code/Review/itkMaskedRankImageFilterTest
    COMP: remove warnings invalid multibyte character sequence

Testing/Code/Review/itkMergeLabelMapFilterTest1
    ENH: Raising code coverage by calling GetMethod().

Testing/Code/Review/itkMultiScaleHessianBasedMeasureImageFilterTest
    BUG: Fix for when NumberOfSigmaStep is set to 0 or 1. Before the fix the filter would run forever in these cases. Also appended these cases to the test.

Testing/Code/Review/itkMultiphaseDenseFiniteDifferenceImageFilterTest
    ENH: remove default template arguments in TestHelper classes.

Testing/Code/Review/itkMultiphaseFiniteDifferenceImageFilterTest
    ENH: remove default template arguments in TestHelper classes.

Testing/Code/Review/itkMultiphaseSparseFiniteDifferenceImageFilterTest
    ENH: remove default template arguments in TestHelper classes.

Testing/Code/Review/itkMultiplyByConstantImageFilterTest
    COMP: Cover operator == and !=.

Testing/Code/Review/itkOptImageToImageMetricsTest

Testing/Code/Review/itkOptMattesMutualInformationImageToImageMetricThreadsTest1
    COMP: Fixed to compile with and without ITK_USE_OPTIMIZED_REGISTRATION_METHODS flag.
    ENH: Comparisons are only needed with larger number of threads.
    ENH: Adding verbose command line option to the Mattes MI multi-threads test.

Testing/Code/Review/itkPadLabelMapFilterTest1
    BUG: Included logic for testing exception expected conditions.

Testing/Code/Review/itkQuadEdgeMeshScalarDataVTKPolyDataWriterTest1
    COMP: initialize point coordinates

Testing/Code/Review/itkRankImageFilterTest
    COMP: remove warnings invalid multibyte character sequence

Testing/Code/Review/itkRegionFromReferenceLabelMapFilterTest1

Testing/Code/Review/itkRegularSphereQuadEdgeMeshSourceTest
    COMP: initialize point coordinates

Testing/Code/Review/itkRelabelLabelMapFilterTest1
    ENH: Enabling compression in the writer.

Testing/Code/Review/itkReviewTests

Testing/Code/Review/itkReviewTests3
    COMP: Moving tests that have Borland linker issues into their own test driver.
584.
584.
584.
584.
584.
584.
584.
    ENH: Added itkShapeLabelObjectAccessorsTest1
    ENH: Adding CMake and itkReviewTest files for itkBinaryImageToShapeLabelMapFilter.

Testing/Code/Review/itkReviewTests4
    COMP: Moving tests that have Borland linker issues into their own test driver.

Testing/Code/Review/itkScalarChanAndVeseDenseLevelSetImageFilterTest2
    ENH: Corrected method name for setting reinitialization weight

Testing/Code/Review/itkScalarRegionBasedLevelSetFunctionTest
    ENH: Changed the API of the methods UpdateSharedDataInsideParameters() and UpdateSharedDataOutsideParameters()

Testing/Code/Review/itkScaleVersor3DTransformTest

Testing/Code/Review/itkShapeKeepNObjectsLabelMapFilterTest1
    BUG: wrong argv selected for attribute.

Testing/Code/Review/itkShapeLabelObjectAccessorsTest1
    ENH: Cover the rest.
    ENH: Added itkShapeLabelObjectAccessorsTest1

Testing/Code/Review/itkShapeOpeningLabelMapFilterTest1
    COMP: Attribute is not a bool. Warning removed.

Testing/Code/Review/itkShapeRelabelImageFilterTest1
584.

Testing/Code/Review/itkShapeRelabelLabelMapFilterTest1

Testing/Code/Review/itkShapeUniqueLabelMapFilterTest1
    COMP: Attribute is not a bool. Warning removed.

Testing/Code/Review/itkShiftScaleLabelMapFilterTest1
    COMP: should not compare a bool with an int.

    ENH: Adding test code coverage.

Testing/Code/Review/itkStatisticsKeepNObjectsLabelMapFilterTest1
    COMP: Attribute is not a bool. Warning removed.

Testing/Code/Review/itkStatisticsOpeningLabelMapFilterTest1
    COMP: Attribute is not a bool. Warning removed.
584.

Testing/Code/Review/itkStatisticsRelabelImageFilterTest1
584.

Testing/Code/Review/itkStatisticsRelabelLabelMapFilterTest1
584.

Testing/Code/Review/itkStatisticsUniqueLabelMapFilterTest1
    COMP: warnings.

Testing/Code/Review/itkSubtractConstantFromImageFilterTest
    COMP: Cover operator == and !=.

Testing/Code/Review/itkTestingMacros
    ENH: Improving error reporting in the TEST_SET_GET_VALUE() macro.

Testing/Code/Review/itkVTKPolyDataIOQuadEdgeMeshTest
    BUG: Test should fail if an unexpected exception occurs.

Testing/Code/Review/itkVTKPolyDataWriterTest2
    COMP: initialize point coordinates

Testing/Code/Review/Statistics/itkChiSquareDistributionTest
    COMP: Use vcl_ versions of pqrt, nd  fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkCovarianceSampleFilterTest
    COMP: Use vcl_ versions of pqrt, nd  fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkCovarianceSampleFilterTest2
    COMP: Use vcl_ versions of pqrt, nd  fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkCovarianceSampleFilterTest3
    COMP: Use vcl_ versions of pqrt, nd  fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkDistanceToCentroidMembershipFunctionTest
    COMP: Use vcl_ versions of pqrt, nd  fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkEuclideanDistanceMetricTest
    COMP: Use vcl_ versions of pqrt, nd  fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkEuclideanSquareDistanceMetricTest
    COMP: Use vcl_ versions of pqrt, nd  fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkExpectationMaximizationMixtureModelEstimatorTest
    COMP: Use vcl_ versions of pqrt, nd  fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkGaussianMembershipFunctionTest
    COMP: Use vcl_ versions of pqrt, nd  fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkImageToListSampleFilterTest3
    COMP: Use vcl_ versions of pqrt, nd  fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkJointDomainImageToListSampleAdaptorTest
    COMP: Use vcl_ versions of pqrt, nd  fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkKdTreeBasedKmeansEstimatorTest
    COMP: Use vcl_ versions of pqrt, nd  fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkKdTreeTest1
    COMP: Use vcl_ versions of pqrt, nd  fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkKdTreeTestSamplePoints
    COMP: Use vcl_ versions of pqrt, nd  fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkMahalanobisDistanceMetricTest
    COMP: Use vcl_ versions of pqrt, nd  fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkManhattanDistanceMetricTest
    COMP: Use vcl_ versions of pqrt, nd  fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkMeanSampleFilterTest
    COMP: Use vcl_ versions of pqrt, nd  fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkSampleClassifierFilterTest7
    COMP: Use vcl_ versions of pqrt, nd  fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkSubsampleTest3
    COMP: Use vcl_ versions of pqrt, nd  fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkTDistributionTest
    COMP: Use vcl_ versions of pqrt, nd  fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkWeightedCentroidKdTreeGeneratorTest1
    COMP: Use vcl_ versions of pqrt, nd  fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkWeightedCentroidKdTreeGeneratorTest8
    COMP: Use vcl_ versions of pqrt, nd  fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkWeightedCentroidKdTreeGeneratorTest9
    COMP: Use vcl_ versions of pqrt, nd  fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkWeightedCovarianceSampleFilterTest
    COMP: Use vcl_ versions of pqrt, nd  fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkWeightedMeanSampleFilterTest
    COMP: Use vcl_ versions of pqrt, nd  fabsto fix build with sun studio

Testing/Data/Baseline/Algorithms/itkMultiResolutionPDEDeformableRegistrationTestPixelCentered.png
    BUG: Pyramid should use ShrinkimageFilter. New baseline.

Testing/Data/Baseline/Filtering/ResampleImageFilter6PixelCentered.png

Testing/Data/Baseline/Filtering/ResampleImageFilter7PixelCentered.png
    BUG: 6558. Updated regression data for remaining failing tests.

Testing/Data/Baseline/Filtering/ResampleImageFilter9TestPixelCentered.1.png
    COMP: Additional baseline needed after bug fix in NearestNeighborInterpolateImageFunction.

Testing/Data/Baseline/Filtering/ResampleImageFilter9TestPixelCentered.2.png
    COMP: Additional baseline needed to deal with differences in floating point precision.

Testing/Data/Baseline/Filtering/ResampleImageFilter9TestPixelCentered.png
    ENH: New base line for the NearestNeighbor interpolation, when Centered Pixel is ON.

Testing/Data/Baseline/IO/rampShort.tif
    ENH: new input and baseline for 16 bit signed 3D tif image.

Testing/Data/Baseline/Registration/ImageRegistration17TestPixelCentered.1.png
    ENH: Baseline for windows platforms.

Testing/Data/Baseline/Registration/ImageRegistration8RegisteredSlice.png
    COMP: New baseline for centered pixels.

Testing/Data/Baseline/Registration/MultiResImageRegistration1Test.2.png
    COMP: additional baseline for some gcc 4.x platforms.

Testing/Data/Baseline/Review/Spots-binaryimage-to-shapelabel.mha

Testing/Data/Baseline/Review/Spots-binaryimage-to-statisticslabel.mha
    COMP: Fix compilation error in Borland related to ImageDimension. ENH: add some tests.

Testing/Data/Baseline/Review/cthead1-binary-shape-opening.mha

Testing/Data/Baseline/Review/cthead1-keep-n-objects.mha
    BUG: Updating version of baseline test for updated ShapeKeepNObjects filter test.

Testing/Data/Baseline/Review/cthead1-label-autocrop.mha
    ENH: Adding baseline for the itkAutoCropLabeMapFilter.

Testing/Data/Baseline/Review/cthead1-label-binary.mha

Testing/Data/Baseline/Review/cthead1-label-changed.mha

Testing/Data/Baseline/Review/cthead1-label-changed2.mha

Testing/Data/Baseline/Review/cthead1-label-changeregion.mha
    ENH: Adding baseline image for the ChangeRegionLabelMapFilter test.

Testing/Data/Baseline/Review/cthead1-label-crop.mha

Testing/Data/Baseline/Review/Attic/cthead1-label-merge_keep.mha

Testing/Data/Baseline/Review/cthead1-label-pad.mha

Testing/Data/Baseline/Review/cthead1-label-regionreference.mha

Testing/Data/Baseline/Review/cthead1-label-relabeled.mha
    ENH: Baseline image for the RelabelLabelMapFilter.

Testing/Data/Baseline/Review/cthead1-label-shiftscaled.mha
    ENH: Baseline image for the itkShiftScaleLabelMapFilterTest1.

Testing/Data/Baseline/Review/cthead1-labelAggregate.mha
    ENH: Baseline image for the test itkAggregateLabelMapFilterTest.

Testing/Data/Baseline/Review/cthead1-labeled.mha

Testing/Data/Baseline/Review/cthead1-shape-opening.mha

Testing/Data/Baseline/Review/cthead1-shape-relabel-labelmap.mha

Testing/Data/Baseline/Review/itkLabelContourImageFilterTest0.png
    BUG: Revert to original baseline.

Testing/Data/Baseline/Review/itkLabelContourImageFilterTest1.png
    BUG: Revert to original baseline.

Testing/Data/Baseline/Review/simple-label-merge-aggregate.mha
    ENH: Adding baseline image for test file of itkMergeLabelMap.

Testing/Data/Baseline/Review/simple-label-merge-keep.mha
    ENH: Adding baseline image for test file of itkMergeLabelMap.

Testing/Data/Baseline/Review/simple-label-merge-pack.mha
    ENH: Adding baseline image for test file of itkMergeLabelMap.

Testing/Data/Baseline/Review/simple-label-merge-strict.mha
    ENH: Adding baseline image for test file of itkMergeLabelMap.

Testing/Data/Baseline/Review/simple-label-to-shapelabelmap.mha
    COMP: Correcting incorrect baseline image due to test image change.

Testing/Data/Baseline/Statistics/itkSampleSelectiveMeanShiftBlurringFilterTestPixelCentered.png
    BUG: 6558. New regression data & CMakeLists.txt for pixel-centered coordinates, for failing test itkSampleSelectiveMeanShiftBlurringFilterTest.

Testing/Data/Input/genusZeroSurface01.vtk
    BUG: Dta file had POINT_DATA keyword but no point data.

Testing/Data/Input/mushroom.vtk
    BUG: Dta file had POINT_DATA keyword but no point data.

Testing/Data/Input/rampShort.tif
    ENH: new input and baseline for 16 bit signed 3D tif image.

Testing/Data/Input/simple-label-a.png
    ENH: Images intended for testing the different modes of operation of the  itkMergeLabelMapFilter.

Testing/Data/Input/simple-label-b.png
    ENH: Images intended for testing the different modes of operation of the  itkMergeLabelMapFilter.

Testing/Data/Input/simple-label-c.png

Testing/Data/Input/simple-label-d.png

Testing/Data/Input/simple-label-e.png

Utilities/MetaIO/.svnrev
    ENH: subversion revision 855 commited to CVS
    ENH: subversion revision 840 commited to CVS
    ENH: subversion revision 838 commited to CVS
    ENH: subversion revision 836 commited to CVS

Utilities/MetaIO/CMakeLists.txt

Utilities/MetaIO/localMetaConfiguration

Utilities/MetaIO/metaArray

Utilities/MetaIO/metaCommand

Utilities/MetaIO/metaForm

Utilities/MetaIO/metaImage

Utilities/MetaIO/metaImage

Utilities/MetaIO/metaImageUtils

Utilities/MetaIO/metaOutput

Utilities/MetaIO/metaUtils

Utilities/MetaIO/metaUtils

Utilities/NrrdIO/read
    BUG: Windows filenames with backslash separators were not handled properly.

Utilities/NrrdIO/reorder
    COMP: gcc 4.4 is producing bogus array bounds warnings. Try to suppress them with a #pragma.

Utilities/NrrdIO/subset
    COMP: gcc 4.4 is producing bogus array bounds warnings. Try to suppress them with a #pragma.

Utilities/expat/expat

Utilities/gdcm/src/CMakeLists.txt
    COMP: suppress GCC warnings regarding type punned pointers and uninitialized variable.

Utilities/kwsys/CMakeLists.txt

Utilities/kwsys/Configure.h.in

Utilities/kwsys/Configure.hxx.in

Utilities/kwsys/Glob
    Fix for Bug #9190, -U did not work on case insensitive file systems because of call to glob convert to regex that expected to work with files.

Utilities/kwsys/Glob.hxx.in
    Fix for Bug #9190, -U did not work on case insensitive file systems because of call to glob convert to regex that expected to work with files.

Utilities/kwsys/MD5
    COMP: Eliminate "conversion may change sign of result" warnings by using size_t where appropriate. (Missed one warning with last commit: add a cast to md5_word_t.)

Utilities/kwsys/ProcessUNIX
    COMP:Fixed warning with gcc 4.3.3: passing argument 1 of kwsysProcessSetVMSFeature discards qualifiers from pointer target type.

Utilities/kwsys/ProcessWin32
    ENH: first pass at VS 10, can bootstrap CMake, but many tests still fail

Utilities/kwsys/RegularExpression.hxx.in

Utilities/kwsys/SharedForward.h.in

Utilities/kwsys/String

Utilities/kwsys/System

Utilities/kwsys/System.h.in

Utilities/kwsys/SystemTools
    COMP: attempt to fix more 'hidden by' warnings.
    ENH: use .exe on vms
    ENH: fix warning on borland

Utilities/kwsys/SystemTools.hxx.in
    ENH: move PutEnv to SystemTools

Utilities/kwsys/hashtable.hxx.in
    STYLE: suppress warnings for borland

Utilities/kwsys/kwsysDateStamp.cmake
    KWSys Nightly Date Stamp
    KWSys Nightly Date Stamp
    KWSys Nightly Date Stamp
    KWSys Nightly Date Stamp
    KWSys Nightly Date Stamp
    KWSys Nightly Date Stamp
    KWSys Nightly Date Stamp
    KWSys Nightly Date Stamp
    KWSys Nightly Date Stamp
    KWSys Nightly Date Stamp
    KWSys Nightly Date Stamp
    KWSys Nightly Date Stamp
    KWSys Nightly Date Stamp
    KWSys Nightly Date Stamp
    KWSys Nightly Date Stamp
    KWSys Nightly Date Stamp
    KWSys Nightly Date Stamp
    KWSys Nightly Date Stamp
    KWSys Nightly Date Stamp
    KWSys Nightly Date Stamp
    KWSys Nightly Date Stamp
    KWSys Nightly Date Stamp
    KWSys Nightly Date Stamp
    STYLE: Nightly Date Stamp
    STYLE: Nightly Date Stamp
    STYLE: Nightly Date Stamp
    STYLE: Nightly Date Stamp
    STYLE: Nightly Date Stamp
    STYLE: Nightly Date Stamp
    STYLE: Nightly Date Stamp
    STYLE: Nightly Date Stamp
    STYLE: Nightly Date Stamp
    STYLE: Nightly Date Stamp
    STYLE: Nightly Date Stamp
    STYLE: Nightly Date Stamp
    STYLE: Nightly Date Stamp
    STYLE: Nightly Date Stamp
    STYLE: Nightly Date Stamp
    STYLE: Nightly Date Stamp
    STYLE: Nightly Date Stamp
    STYLE: Nightly Date Stamp
    STYLE: Nightly Date Stamp
    STYLE: Nightly Date Stamp
    STYLE: Nightly Date Stamp
    STYLE: Nightly Date Stamp
    STYLE: Nightly Date Stamp
    STYLE: Nightly Date Stamp
    STYLE: Nightly Date Stamp
    STYLE: Nightly Date Stamp
    STYLE: Nightly Date Stamp
    STYLE: Nightly Date Stamp
    STYLE: Nightly Date Stamp
    STYLE: Nightly Date Stamp
    STYLE: Nightly Date Stamp
    STYLE: Nightly Date Stamp

Utilities/kwsys/kwsysPlatformTestsCXX

Utilities/kwsys/kwsysPrivate

Utilities/kwsys/testAutoPtr
    STYLE: suppress warnings for borland

Utilities/kwsys/testIOS

Utilities/netlib/slatec/CMakeLists.txt
    BUG: Slatec lib is not versioned.

Utilities/nifti/CMakeLists.txt

Utilities/nifti/Updates.txt
    COMP:  Syncronized with nifti main source tree.

Utilities/nifti/Testing/CMakeLists.txt

Utilities/nifti/Testing/nifti_regress_test/CMakeLists.txt

Utilities/nifti/Testing/niftilib/CMakeLists.txt

Utilities/nifti/examples/CMakeLists.txt

Utilities/nifti/examples/Makefile
    COMP:  Syncronized with nifti main source tree.

Utilities/nifti/fsliolib/CMakeLists.txt

Utilities/nifti/nifticdf/CMakeLists.txt

Utilities/nifti/niftilib/CMakeLists.txt

Utilities/nifti/niftilib/nifti1_io
    COMP:  Removed compiler warnings, and did some more const-correctness fixes.
    COMP:  Suppressed compiler warning by making types consistently defined.
    COMP:  Syncronized with nifti main source tree.

Utilities/nifti/niftilib/nifti1_io
    COMP:  Removed compiler warnings, and did some more const-correctness fixes.

Utilities/nifti/utils/CMakeLists.txt
    COMP:  Removed compiler warnings, and did some more const-correctness fixes.
    COMP:  Syncronized with nifti main source tree.

Utilities/nifti/znzlib/CMakeLists.txt
    COMP:  Syncronized with nifti main source tree.

Utilities/vxl/core/testlib/tests/CMakeLists.txt

Utilities/vxl/core/vnl/CMakeLists.txt
    ENH: If there is no hardware sse2 support, make sure to disable VNL_CONFIG_ENABLE_SSE2_ROUNDING in the cmake cache

Utilities/vxl/core/vnl/vnl_diag_matrix
    COMP:  Removed compiler warnings.

Utilities/vxl/core/vnl/vnl_ma
    BUG: VNL did not define vnl_math::two_over_sqrt2pi in a cxx file

Utilities/vxl/core/vnl/vnl_math
    COMP: Fixed universal binary compilation issues related to sse2 by conditionning the sse2 code by defined(__SSE2__). This preprocessor define seems to be supported by gcc, icc and msvc.

Utilities/vxl/core/vnl/vnl_sse
    COMP:  Removed 100's of compiler warning messages about unused variables n and size.

Utilities/vxl/core/vnl/Templates/vnl_matrix_fixed+double.5.5-
    COMP: Fix build with explicit instantions activated.

Utilities/vxl/core/vnl/tests/test_ma
    COMP: Trying to resolve static const issue on Intel 10.0 compiler.

Utilities/vxl/core/vnl/tests/test_numeric_traits
    COMP: Trying to resolve static const issue on Intel 10.0 compiler.

Utilities/vxl/v3p/netlib/v3p_f2c_mangle
    COMP: Fix Attempt to redefine c_abs without using #undef warning with Sun Studio

Utilities/vxl/v3p/netlib/tests/CMakeLists.txt

Utilities/vxl/vcl/tests/CMakeLists.txt

Wrapping/CSwig/pythonfiles_install.cmake.in

Wrapping/ExplicitITK/Modules/Common/wrap_itkConstNeighborhoodIterator.cmake
    COMP: Fix build with explicit instantions activated.

Wrapping/ExplicitITK/Modules/Common/wrap_itkMatrix.cmake
    COMP: Fix build with explicit instantions activated.

Wrapping/WrapITK/ExternalProjects/PyBuffer/itkPyBuffer
insight-users/2009-May/030625.html

Wrapping/WrapITK/Modules/VXLNumerics/CMakeLists.txt
    COMP: #0009137: ITK links against itkvnl with USE_WRAP_ITK despite ITK_USE_SYSTEM_VXL. Fixed by linking to ITKCommon, which is always available.

Wrapping/WrapITK/Modules/VXLNumerics/wrap_vnl_matrix_fixed.cmake