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itk::ArchetypeSeriesFileNames Class Reference
[Input and Output Filters]

#include <itkArchetypeSeriesFileNames.h>

Inheritance diagram for itk::ArchetypeSeriesFileNames:

[legend]Collaboration diagram for itk::ArchetypeSeriesFileNames:

[legend]List of all members.

Detailed Description

Generate an ordered sequence of filenames.

This class generates an ordered sequence of files based on an archetypical filename. From the archetypical filename, a set of regular expressions is created to group filenames based on numeric substrings. There can be multiple numeric substrings in the archetype. When this occurs, ArchetypeSeriesFileNames can not determine which numeric substring refers to the "image number" and which numeric substring refers to the "series" or "study". By default, the ArchetypeSeriesFileNames assumes the rightmost numeric substring refers to the image number, and this is the group of filenames returned by default. However, the other groupings of filenames can also be queried by passing in a group number to the GetFileNames() method. Groups are numbered by the numeric substrings from right to left in the archetype.

For example, if a directory contains the files

foo_5_1.png foo_5_2.png foo_5_3.png foo_6_1.png foo_6_2.png foo_6_3.png

and specifying an archetypical file foo_5_1.png, the filename list will contain

foo_5_1.png foo_5_2.png foo_5_3.png

Definition at line 71 of file itkArchetypeSeriesFileNames.h.

Public Types

typedef SmartPointer< const
Self > ConstPointer

typedef SmartPointer< Self > Pointer

typedef ArchetypeSeriesFileNames Self

typedef Object Superclass

Public Member Functions

virtual LightObject::Pointer CreateAnother () const

virtual void DebugOff () const

virtual void DebugOn () const

virtual void Delete ()

virtual const char * GetArchetype () const

Command * GetCommand (unsigned long tag)

bool GetDebug () const

const std::vector< std::string > & GetFileNames (unsigned int group=0)

const MetaDataDictionary & GetMetaDataDictionary (void) const

MetaDataDictionary & GetMetaDataDictionary (void)

virtual unsigned long GetMTime () const

virtual const char * GetNameOfClass () const

unsigned int GetNumberOfGroupings ()

virtual int GetReferenceCount () const

bool HasObserver (const EventObject &event) const

void InvokeEvent (const EventObject &) const

void InvokeEvent (const EventObject &)

virtual void Modified () const

void Print (std::ostream &os, Indent indent=0) const

virtual void Register () const

void RemoveAllObservers ()

void RemoveObserver (unsigned long tag)

void SetArchetype (const std::string &archetype)

void SetDebug (bool debugFlag) const

void SetMetaDataDictionary (const MetaDataDictionary &rhs)

virtual void SetReferenceCount (int)

virtual void UnRegister () const

Static Public Member Functions

static void BreakOnError ()

static bool GetGlobalWarningDisplay ()

static void GlobalWarningDisplayOff ()

static void GlobalWarningDisplayOn ()

static Pointer New ()

This is a global flag that
controls whether any warning
*or error messages are displayed
*static void SetGlobalWarningDisplay (bool flag)

Public Attributes

Allow people to add remove
invoke observers(callbacks)
to any ITK *object.This is
an implementation of the subject/observer design *pattern.An
observer is added by specifying
an event to respond to *and
an itk unsigned lon AddObserver )(const EventObject &event, Command *) const

This is a global flag that
controls whether any debug

Protected Member Functions

ArchetypeSeriesFileNames ()

bool PrintObservers (std::ostream &os, Indent indent) const

void PrintSelf (std::ostream &os, Indent indent) const

virtual void PrintTrailer (std::ostream &os, Indent indent) const

void Scan ()

~ArchetypeSeriesFileNames ()

Protected Attributes

int m_ReferenceCount

SimpleFastMutexLock m_ReferenceCountLock

Methods invoked by virtual
Print() to print information
about the object *including
superclasses.Typically not
called by the user(use Print()*instead) but used in the
hierarchical print process
to combine the *output of
several classes.*/virtual
void PrintSelf(std voi PrintHeader )(std::ostream &os, Indent indent) const

Member Typedef Documentation

typedef SmartPointer<Self> itk::ArchetypeSeriesFileNames::Pointer

Reimplemented from itk::Object.
Definition at line 77 of file itkArchetypeSeriesFileNames.h.

typedef ArchetypeSeriesFileNames itk::ArchetypeSeriesFileNames::Self

Standard class typedefs.
Reimplemented from itk::Object.
Definition at line 75 of file itkArchetypeSeriesFileNames.h.

typedef Object itk::ArchetypeSeriesFileNames::Superclass

Reimplemented from itk::Object.
Definition at line 76 of file itkArchetypeSeriesFileNames.h.

Constructor & Destructor Documentation

itk::ArchetypeSeriesFileNames::ArchetypeSeriesFileNames ( ) [protected]

itk::ArchetypeSeriesFileNames::~ArchetypeSeriesFileNames ( ) [inline, protected]

Definition at line 103 of file itkArchetypeSeriesFileNames.h.

Member Function Documentation

static void itk::LightObject::BreakOnError ( ) [static, inherited]

This method is called when itkExceptionMacro executes. It allows the debugger to break on error.

virtual LightObject::Pointer itk::Object::CreateAnother ( ) const [virtual, inherited]

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.
Reimplemented from itk::LightObject.

virtual void itk::Object::DebugOff ( ) const [virtual, inherited]

Turn debugging output off.

virtual void itk::Object::DebugOn ( ) const [virtual, inherited]

Turn debugging output on.

virtual void itk::LightObject::Delete ( ) [virtual, inherited]

Delete an itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C delete method will not work with reference counting.

virtual const char* itk::ArchetypeSeriesFileNames::GetArchetype ( ) const [virtual]

Command* itk::Object::GetCommand ( unsigned long tag ) [inherited]

Get the command associated with the given tag. NOTE: This returns a pointer to a Command, but it is safe to asign this to a Command::Pointer. Since Command inherits from LightObject, at this point in the code, only a pointer or a reference to the Command can be used.

bool itk::Object::GetDebug ( ) const [inherited]

Get the value of the debug flag.

const std::vector<std::string>& itk::ArchetypeSeriesFileNames::GetFileNames ( unsigned int group = 0 )

Returns a vector containing the series' file names. The file names are ordered by Index. Defaults to returning the filenames to the rightmost grouping.

static bool itk::Object::GetGlobalWarningDisplay ( ) [static, inherited]

const MetaDataDictionary& itk::Object::GetMetaDataDictionary ( void ) const [inherited]

Returns:
A constant reference to this objects MetaDataDictionary.

MetaDataDictionary& itk::Object::GetMetaDataDictionary ( void ) [inherited]

Returns:
A reference to this objects MetaDataDictionary.

Warning:
This reference may be changed.

virtual unsigned long itk::Object::GetMTime ( ) const [virtual, inherited]

Return this objects modified time.
Reimplemented in itk::ImageRegistrationMethod< TFixedImage, TMovingImage >, itk::DeformationFieldSource< TOutputImage >, itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::BoundingBox< TPointIdentifier, VPointDimension, TCoordRep, TPointsContainer >, itk::SceneSpatialObject< SpaceDimension >, and itk::SceneSpatialObject< NDimensions >.

virtual const char* itk::ArchetypeSeriesFileNames::GetNameOfClass ( ) const [virtual]

Run-time type information (and related methods).
Reimplemented from itk::Object.

unsigned int itk::ArchetypeSeriesFileNames::GetNumberOfGroupings ( )

Get the number of groupings that match the Archetype

virtual int itk::LightObject::GetReferenceCount ( ) const [inline, virtual, inherited]

Gets the reference count on this object.
Definition at line 98 of file itkLightObject.h.

static void itk::Object::GlobalWarningDisplayOff ( ) [inline, static, inherited]

Definition at line 100 of file itkObject.h.
References itk::Object::SetGlobalWarningDisplay().

static void itk::Object::GlobalWarningDisplayOn ( ) [inline, static, inherited]

Definition at line 98 of file itkObject.h.
References itk::Object::SetGlobalWarningDisplay().

bool itk::Object::HasObserver ( const EventObject & event ) const [inherited]

Return true if an observer is registered for this event.

void itk::Object::InvokeEvent ( const EventObject & ) const [inherited]

Call Execute on all the Commands observing this event id. The actions triggered by this call doesn't modify this object.

void itk::Object::InvokeEvent ( const EventObject & ) [inherited]

Call Execute on all the Commands observing this event id.

virtual void itk::Object::Modified ( ) const [virtual, inherited]

Update the modification time for this object. Many filters rely on the modification time to determine if they need to recompute their data.
Referenced by itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetCenter(), itk::HistogramAlgorithmBase< TInputHistogram >::SetInputHistogram(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetMatrix(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetOffset(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetRealThresholds(), itk::CollidingFrontsImageFilter< TInputImage, TOutputImage >::SetSeedPoints1(), itk::CollidingFrontsImageFilter< TInputImage, TOutputImage >::SetSeedPoints2(), itk::NonUniformBSpline< TDimension >::SetSplineOrder(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetThresholds(), itk::Statistics::GoodnessOfFitFunctionBase< typename ComponentType::HistogramType >::SetTotalObservedScale(), and itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetTranslation().

static Pointer itk::ArchetypeSeriesFileNames::New ( ) [static]

Method for creation through the object factory.
Reimplemented from itk::Object.

void itk::LightObject::Print ( std::ostream & os,

Indent indent = 0

) const [inherited]

Cause the object to print itself out.

bool itk::Object::PrintObservers ( std::ostream & os,

Indent indent

) const [protected, inherited]

void itk::ArchetypeSeriesFileNames::PrintSelf ( std::ostream & os,

Indent indent

) const [protected, virtual]

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.
Reimplemented from itk::Object.

virtual void itk::LightObject::PrintTrailer ( std::ostream & os,

Indent indent

) const [protected, virtual, inherited]

virtual void itk::Object::Register ( ) const [virtual, inherited]

Increase the reference count (mark as used by another object).
Reimplemented from itk::LightObject.

void itk::Object::RemoveAllObservers ( ) [inherited]

Remove all observers .

void itk::Object::RemoveObserver ( unsigned long tag ) [inherited]

Remove the observer with this tag value.

void itk::ArchetypeSeriesFileNames::Scan ( ) [protected]

Method that actually does the archetype matching/grouping

void itk::ArchetypeSeriesFileNames::SetArchetype ( const std::string & archetype )

void itk::Object::SetDebug ( bool debugFlag ) const [inherited]

Set the value of the debug flag. A non-zero value turns debugging on.

This is a global flag that controls whether any warning* or error messages are displayed* static void itk::Object::SetGlobalWarningDisplay ( bool flag ) [static, inherited]

Referenced by itk::Object::GlobalWarningDisplayOff(), and itk::Object::GlobalWarningDisplayOn().

void itk::Object::SetMetaDataDictionary ( const MetaDataDictionary & rhs ) [inherited]

Returns:
Set the MetaDataDictionary

virtual void itk::Object::SetReferenceCount ( int ) [virtual, inherited]

Sets the reference count (use with care)
Reimplemented from itk::LightObject.

virtual void itk::Object::UnRegister ( ) const [virtual, inherited]

Decrease the reference count (release by another object).
Reimplemented from itk::LightObject.

Member Data Documentation

Allow people to add remove invoke observers (callbacks) to any ITK * object. This is an implementation of the subject/observer design * pattern. An observer is added by specifying an event to respond to * and an itk unsigned lon itk::Object::AddObserver)(const EventObject &event, Command *) const [inherited]

This is a global flag that controls whether any itk::Object::debug [inherited]

Definition at line 94 of file itkObject.h.

int itk::LightObject::m_ReferenceCount [mutable, protected, inherited]

Number of uses of this object by other objects.
Definition at line 119 of file itkLightObject.h.

SimpleFastMutexLock itk::LightObject::m_ReferenceCountLock [mutable, protected, inherited]

Mutex lock to protect modification to the reference count
Definition at line 122 of file itkLightObject.h.

Methods invoked by virtual Print () to print information about the object * including superclasses. Typically not called by the user (use Print() * instead) but used in the hierarchical print process to combine the * output of several classes. */ virtual void PrintSelf(std voi itk::LightObject::PrintHeader)(std::ostream &os, Indent indent) const [protected, inherited]

The documentation for this class was generated from the following file:

itkArchetypeSeriesFileNames.h

Generated at Sun Jul 9 18:51:54 2006 for ITK by


Public Types
typedef SmartPointer< const Self >	ConstPointer
typedef SmartPointer< Self >	Pointer
typedef ArchetypeSeriesFileNames	Self
typedef Object	Superclass
Public Member Functions
virtual LightObject::Pointer	CreateAnother () const
virtual void	DebugOff () const
virtual void	DebugOn () const
virtual void	Delete ()
virtual const char *	GetArchetype () const
Command *	GetCommand (unsigned long tag)
bool	GetDebug () const
const std::vector< std::string > &	GetFileNames (unsigned int group=0)
const MetaDataDictionary &	GetMetaDataDictionary (void) const
MetaDataDictionary &	GetMetaDataDictionary (void)
virtual unsigned long	GetMTime () const
virtual const char *	GetNameOfClass () const
unsigned int	GetNumberOfGroupings ()
virtual int	GetReferenceCount () const
bool	HasObserver (const EventObject &event) const
void	InvokeEvent (const EventObject &) const
void	InvokeEvent (const EventObject &)
virtual void	Modified () const
void	Print (std::ostream &os, Indent indent=0) const
virtual void	Register () const
void	RemoveAllObservers ()
void	RemoveObserver (unsigned long tag)
void	SetArchetype (const std::string &archetype)
void	SetDebug (bool debugFlag) const
void	SetMetaDataDictionary (const MetaDataDictionary &rhs)
virtual void	SetReferenceCount (int)
virtual void	UnRegister () const
Static Public Member Functions
static void	BreakOnError ()
static bool	GetGlobalWarningDisplay ()
static void	GlobalWarningDisplayOff ()
static void	GlobalWarningDisplayOn ()
static Pointer	New ()
This is a global flag that controls whether any warning or error messages are displayed static void	SetGlobalWarningDisplay (bool flag)
Public Attributes
Allow people to add remove invoke observers(callbacks) to any ITK object.This is an implementation of the subject/observer design pattern.An observer is added by specifying an event to respond to *and an itk unsigned lon	AddObserver )(const EventObject &event, Command *) const
This is a global flag that controls whether any	debug
Protected Member Functions
	ArchetypeSeriesFileNames ()
bool	PrintObservers (std::ostream &os, Indent indent) const
void	PrintSelf (std::ostream &os, Indent indent) const
virtual void	PrintTrailer (std::ostream &os, Indent indent) const
void	Scan ()
	~ArchetypeSeriesFileNames ()
Protected Attributes
int	m_ReferenceCount
SimpleFastMutexLock	m_ReferenceCountLock
Methods invoked by virtual Print() to print information about the object including superclasses.Typically not called by the user(use Print()instead) but used in the hierarchical print process to combine the output of several classes./virtual void PrintSelf(std voi	PrintHeader )(std::ostream &os, Indent indent) const

itk::ArchetypeSeriesFileNames Class Reference [Input and Output Filters]

Detailed Description

Public Types

Public Member Functions

Static Public Member Functions

Public Attributes

Protected Member Functions

Protected Attributes

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

itk::ArchetypeSeriesFileNames Class Reference
[Input and Output Filters]